1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttgatagagcgcactttttctaaattttagcggtgtattctgataaattttgtttgtttctttttttttttttttttttttttttttttttacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCATTCATACTCGACATTCGTAATAACAG
species | Physcomitrella patens |
transcript | PP1S199_127V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTAAAGTTGGGCTATATTCGGCTCTCCACCTTCAATCAGAATTCCTCCA GTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCATEST: gi|162195103|gb|FC371378.1|FC371378
genomic: ATTAAAGTTGGGCTATATTCGGCTCTCCACCTTCAATCAGAATTCCTCCAgtacgtccac ... tacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
EST: TCTCCACCTTCAATCAGAATTCCTCCA GTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCATEST: gi|162192956|gb|FC371458.1|FC371458
genomic: TCTCCACCTTCAATCAGAATTCCTCCAgtacgtccac ... tacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
EST: ATTAAAGTTGGGCTATATTCGGCTCTCCACCTTCAATCAGAATTCCTCCA GTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCATEST: gi|162224470|gb|FC399846.1|FC399846
genomic: ATTAAAGTTGGGCTATATTCGGCTCTCCACCTTCAATCAGAATTCCTCCAgtacgtccac ... tacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
EST: CCACC-TCAATCAGAAATTCCTCCA GTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
genomic: CCACCTTCAATCAG-AATTCCTCCAgtacgtccac ... tacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCAT
aattttgtttgtttctttttttttttttttttttttttttttttttacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCATTCATACTCGACATTCGTAATAACAG
tttgtttctttttttt CT-rich tract
tttttttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatagagcgcactttttctaaattttagcggtgtattctgataaattttgtttgtttctttttttttttttttttttttttttttttttacaaattagGTGCTGTAAAGAAAGCTATCGAGACTTTGCAGGAGAGTGGGGCAGCCGCATTCATACTCGACATTCGTAATAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA