1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacatcttttcacctgcaaactcctcatcctgtatctgttacattccagtgtgtctcttaggccactgttgatgagattttattttatattttgttttatttatttatttattttccttcttcttcttcttcttcttcttcttctagacacttgattgcggtgtgtgctgatccatgttgtgtggtttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAATGGATGTGTCCTGATCGGCACTTTGGACGGTGCCAATGTCGAGATCCGG
species | Physcomitrella patens |
transcript | PP1S195_41V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAG TACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAAEST: gi|162230882|gb|FC406721.1|FC406721
genomic: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAGgtacatcttt ... ttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
EST: CTCACAACACATAAG TACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAAEST: gi|162244633|gb|FC423456.1|FC423456
genomic: CTCACAACACATAAGgtacatcttt ... ttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
EST: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGTACTCTCACAACACATAAG TACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAAEST: gi|162205099|gb|FC381808.1|FC381808
genomic: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAGgtacatcttt ... ttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
EST: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAG TACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAAEST: gi|7047197|gb|AW477091.1|AW477091
genomic: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAGgtacatcttt ... ttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
EST: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAG TACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAAEST: gi|162156520|gb|FC332128.1|FC332128
genomic: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAGgtacatcttt ... ttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
EST: CAACACATAAG TACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAAEST: gi|162252933|gb|FC429306.1|FC429306
genomic: CAACACATAAGgtacatcttt ... ttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
EST: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAG TACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAAEST: gi|162164490|gb|FC341590.1|FC341590
genomic: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAGgtacatcttt ... ttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
EST: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAG TACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAAEST: gi|162211897|gb|FC387769.1|FC387769
genomic: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAGgtacatcttt ... ttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
EST: GAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAG TACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAAEST: gi|67569715|gb|BJ942539.1|BJ942539
genomic: GAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAGgtacatcttt ... ttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
EST: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAG TACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
genomic: AGTGTTGCAGAGGTTCTTATCCCTGCAAGTGAACTCTCACAACACATAAGgtacatcttt ... ttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAA
ttctagacacttgattgcggtgtgtgctgatccatgttgtgtggtttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAATGGATGTGTCCTGATCGGCACTTTGGACGGTGCCAATGTCGAGATCCGG
tgctgat putative branch site (score: 12)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatcttttcacctgcaaactcctcatcctgtatctgttacattccagtgtgtctcttaggccactgttgatgagattttattttatattttgttttatttatttatttattttccttcttcttcttcttcttcttcttcttctagacacttgattgcggtgtgtgctgatccatgttgtgtggtttggtttcagTACTGCGGGAATGGAAGCAAGTGGCACGAGTAACATGAAGTTTTCGATGAATGGATGTGTCCTGATCGGCACTTTGGACGGTGCCAATGTCGAGATCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC