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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccactttttgctttctttttccttgcaatcttcttgtgctcttttctaatgcttgaagtatacaactaatcggctaattgcctgcatcaacttcatagccattcttgctggatggtttgtggatgatttgtacttaccggttttctgttgattgtaccagCCCTGTTCTATAGGATTTGGTTTTGGTCGGACTTTCTTCCTCTGGGGTGGCTGCATGATG

Basic information

species Physcomitrella patens
transcript PP1S194_131V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162167579|gb|FC344244.1|FC344244
EST:     ACTTGCCTTCGGGTAGTATTAGCAGCTACTGCATTTATGAGTACCACCTG                         CCCTGTTCTATAAGATTTGG
genomic: ACTTGCCTTCGGGTAGTATTAGCAGCTACTGCATTTATGAGTACCACCTGgtatccactt ... attgtaccagCCCTGTTCTATAGGATTTGG
EST: gi|162174799|gb|FC352215.1|FC352215
EST:     ACTTGCCTTCGGGTAGTATTAGCAGCTACTGCATTTATGAGTACCACCTG                         CCCTGTTCTATAGGATTTGGTTTTGGTCGGACTTTCTTCCTCTGGGGTGGC
genomic: ACTTGCCTTCGGGTAGTATTAGCAGCTACTGCATTTATGAGTACCACCTGgtatccactt ... attgtaccagCCCTGTTCTATAGGATTTGGTTTTGGTCGGACTTTCTTCCTCTGGGGTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctggatggtttgtggatgatttgtacttaccggttttctgttgattgtaccagCCCTGTTCTATAGGATTTGGTTTTGGTCGGACTTTCTTCCTCTGGGGTGGCTGCATGATG
                 atgattt  TA-rich tract