1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcatcattactctcttgaatgcggctgtagtgtactaaaatagaaaccttgggaagtgaaaagttgtcttgacaatcacaatggggttggctattggtagTCCGGATGGGAAGTACATATTGACAGGTGGAGAAGACGATCTTGTACAAGTTTGGAGTATGGAGGATCAAGCCGTCGTTGCTTGGGGGGTGGGGCATAAT
species | Physcomitrella patens |
transcript | PP1S193_64V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTATGTGGGTGTAAAAGTTATTTTGGTGCCTTGCTTTGCTGTTCTTGGAG TCCGGATGGGAAGTACATATTGACAGGTGGAGAAGACGATCTTGTACAAGTEST: gi|162176940|gb|FC353617.1|FC353617
genomic: GTATGTGGGTGTAAAAGTTATTTTGGTGCCTTGCTTTGCTGTTCTTGGAGgtattgtctc ... ctattggtagTCCGGATGGGAAGTACATATTGACAGGTGGAGAAGACGATCTTGTACAAGT
EST: GTATGTGGGTGTAAAAGTTATTTTGGTGCCTTGCTNTGCTGTTCTTGGAG TCCGGATGGGAAGTACATATTGACAGGTGGAGAAGACGATCTTGTACAAGTEST: gi|162249676|gb|FC428142.1|FC428142
genomic: GTATGTGGGTGTAAAAGTTATTTTGGTGCCTTGCTTTGCTGTTCTTGGAGgtattgtctc ... ctattggtagTCCGGATGGGAAGTACATATTGACAGGTGGAGAAGACGATCTTGTACAAGT
EST: AAAAGTTATTTTGGTGCCTTGCTTTGCTGTTCTTGGAG TCCGGATGGGAAGTACATATTGACAGGTGGAGAAGACGATCTTGTACAAGT
genomic: AAAAGTTATTTTGGTGCCTTGCTTTGCTGTTCTTGGAGgtattgtctc ... ctattggtagTCCGGATGGGAAGTACATATTGACAGGTGGAGAAGACGATCTTGTACAAGT
accttgggaagtgaaaagttgtcttgacaatcacaatggggttggctattggtagTCCGGATGGGAAGTACATATTGACAGGTGGAGAAGACGATCTTGTACAAGTTTGGAGTATGGAGGATCAAGCCGTCGTTGCTTGGGGGGTGGGGCATAAT
tcttgac putative branch site (score: 15)
aaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatcattactctcttgaatgcggctgtagtgtactaaaatagaaaccttgggaagtgaaaagttgtcttgacaatcacaatggggttggctattggtagTCCGGATGGGAAGTACATATTGACAGGTGGAGAAGACGATCTTGTACAAGTTTGGAGTATGGAGGATCAAGCCGTCGTTGCTTGGGGGGTGGGGCATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT