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...atcacaaaacacattaagtaggtccattttttgtagttatattctctaacttgtgaagttcaatgactaactccatcgagtgcatgggtgtggggtgtagATAGTGTACGTAGGCGATGGTAACAACATGGTCCACTCTTGGTTGCGCCTGGCAGCTGTGCTGCCTTTTCATTTCATATGTGCATGCCCACGTGGTTATG
species | Physcomitrella patens |
transcript | PP1S189_99V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGACGTCCTAACTATTAATGAGTTCATTGGCAATATAGAGGGTCTGAAG ATAGTGTACGTAGGCGATGGTAACAACATGGTCCACTCTTGGTTGCGCCTGEST: gi|67508196|gb|BJ941067.1|BJ941067
genomic: CTGACGTCCTAACTATTAATGAGTTCATTGGCAATATAGAGGGTCTGAAGgtatgccttg ... tggggtgtagATAGTGTACGTAGGCGATGGTAACAACATGGTCCACTCTTGGTTGCGCCTG
EST: CTGACGTCCTAACTATTAATGAGTTCATTGGCAATATAGAGGGTCTGAAG ATAGTGTACGTAGGCGATGGTAACAACATGGTCCACTCTTGGTTGCGCCTGEST: gi|162218791|gb|FC394334.1|FC394334
genomic: CTGACGTCCTAACTATTAATGAGTTCATTGGCAATATAGAGGGTCTGAAGgtatgccttg ... tggggtgtagATAGTGTACGTAGGCGATGGTAACAACATGGTCCACTCTTGGTTGCGCCTG
EST: CTGACGTCCTAACTATTAATGAGTTCATTGGCAATATAGAGGGTCTGAAG ATAGTGTACGTAGGCGATGGTAACAACATGGTCCACTCTTGGTTGCGCCTGEST: gi|208367871|gb|DC955334.1|DC955334
genomic: CTGACGTCCTAACTATTAATGAGTTCATTGGCAATATAGAGGGTCTGAAGgtatgccttg ... tggggtgtagATAGTGTACGTAGGCGATGGTAACAACATGGTCCACTCTTGGTTGCGCCTG
EST: ATATAGAGGGTCTGAAG ATAGTGTACGTANGCGAT-GTNACAACA-NGTCCACTCTTGGTTGCGCCTG
genomic: ATATAGAGGGTCTGAAGgtatgccttg ... tggggtgtagATAGTGTACGTAGGCGATGGTAACAACATGGTCCACTCTTGGTTGCGCCTG
ctaacttgtgaagttcaatgactaactccatcgagtgcatgggtgtggggtgtagATAGTGTACGTAGGCGATGGTAACAACATGGTCCACTCTTGGTTGCGCCTGGCAGCTGTGCTGCCTTTTCATTTCATATGTGCATGCCCACGTGGTTATG
gactaac putative branch site (score: 11)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcacaaaacacattaagtaggtccattttttgtagttatattctctaacttgtgaagttcaatgactaactccatcgagtgcatgggtgtggggtgtagATAGTGTACGTAGGCGATGGTAACAACATGGTCCACTCTTGGTTGCGCCTGGCAGCTGTGCTGCCTTTTCATTTCATATGTGCATGCCCACGTGGTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC