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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacaacttttcagtagttgactaaggaaggcagtccgatgaagttctcattttatcatttgtttcaatcatctgaagtcattttcattttcattgtgcagGATTCTGGCAAACAGCAAACCCTGCCCTAAATGTAAGAGACCGATTGAAAAAAACCAAGGCTGCATGCATATTACTTGCACACCACCTTGCAAATTTGAG

Basic information

species Physcomitrella patens
transcript PP1S178_72V6.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S178_72V6.3 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os08g42740.3 (Oryza sativa), 3'ss of exon 7
aacaacttttcagtagttgactaaggaaggcagtccgatgaagttctcattttatcatttgtttca-atcatctgaagtcattttcattttcattgtgcagGATTCTGGCAAACAGCAAACCCTGCCCTAAATGTAAGAGACCGATTGAAAAAAACCAAGGCTGCATGCATATTACTTGCACACCACCTTGCAAATTTGAG
   |     | | |  |  | |               |||  | |   | |     | |  | ||| ||  | |    |  | || ||  || || | |||||| ||||| ||    || || ||||| ||||| ||  |||| || || |||||||| || ||||||||||| |||||||| ||||||||||||||||||
gctagtccatgaatgctcaaatgtatttaaggtctttatgttgcttgaaatcatctaatcatgtcagatggtttatcatgttgttgatgatcctttt-cagGATACTGGCTAATTCTAAGCCGTGCCCAAAATGCAAACGACCAATAGAGAAAAACCAGGGATGCATGCATATGACTTGCACTCCACCTTGCAAATTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22132083|gb|BQ826972.1|BQ826972
EST:     GTCAACAAGTGGATACTGAAGAATTGCGCCGAGTCGGAGAATATGAATTG                         GATTCTGGCAAACAGCAAACCCTGCCCTAAATGTAAGAGACCGATTGNNNN
genomic: GTCAACAAGTGGATACTGAAGAATTGCGCCGAGTCGGAGAATATGAATTGgtacgtattg ... cattgtgcagGATTCTGGCAAACAGCAAACCCTGCCCTAAATGTAAGAGACCGATTG-AAA
EST: gi|162175945|gb|FC352351.1|FC352351
EST:     GTCAACAAGTGGATACTGAAGAATTGCGCCGAGTCGGAGAATATGAATTG                         GATTCTGGCAAACAGCAAACCCTGCCCTAAATGTAAGAGACCGATTGNNNN
genomic: GTCAACAAGTGGATACTGAAGAATTGCGCCGAGTCGGAGAATATGAATTGgtacgtattg ... cattgtgcagGATTCTGGCAAACAGCAAACCCTGCCCTAAATGTAAGAGACCGATTGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcattttatcatttgtttcaatcatctgaagtcattttcattttcattgtgcagGATTCTGGCAAACAGCAAACCCTGCCCTAAATGTAAGAGACCGATTGAAAAAAACCAAGGCTGCATGCATATTACTTGCACACCACCTTGCAAATTTGAG
                                tcattttcattttc  CT-rich tract
                                  attttcattttcatt  TA-rich tract