1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgataaacgaactgttgcttgactacccaaacatttgctttctcgatgatattcgtaggtttgtttcggtttctttttttcttgtttttcttttttgatatatttccgtttatagcacttatctgggattgggtgcgtgcagGATGATTTAACAACTAGGAGGTGGCTTAACCAGCTGATGATGAATGTGGGGCAGCAGATGCATCCACAGCGTGTGCCATCAGGAATGCAGGGTGCTGGAA
species | Physcomitrella patens |
transcript | PP1S15_262V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTGTCTCCCTGAACTTCTTCAAAACGGCACCTTCAATAACTGTCTACGG GATGATTTAACAACTAGGAGGTGGCTTAACCAGCTGATGATGAATGTGGGGEST: gi|37852486|gb|BJ610494.1|BJ610494
genomic: ATTGTCTCCCTGAACTTCTTCAAAACGGCACCTTCAATAACTGTCTACGGgtatgataaa ... gtgcgtgcagGATGATTTAACAACTAGGAGGTGGCTTAACCAGCTGATGATGAATGTGGGG
EST: TTCAAAACGGCACCTTCAATAACTGTCTACGG GATGATTTAACAACTAGGAGGTGGCTTAACCAGCTGATGATGAATGTGGGGEST: gi|37833386|gb|BJ591398.1|BJ591398
genomic: TTCAAAACGGCACCTTCAATAACTGTCTACGGgtatgataaa ... gtgcgtgcagGATGATTTAACAACTAGGAGGTGGCTTAACCAGCTGATGATGAATGTGGGG
EST: ATTGTCTCCCTGAACTTCTTCAAAACGGCACCTTCAATAACTGTCTACGG GATGATTTAACAACTAGGAGGTGGCTTAACCAGCTGATGATGAATGTGGGG
genomic: ATTGTCTCCCTGAACTTCTTCAAAACGGCACCTTCAATAACTGTCTACGGgtatgataaa ... gtgcgtgcagGATGATTTAACAACTAGGAGGTGGCTTAACCAGCTGATGATGAATGTGGGG
ttcttttttgatatatttccgtttatagcacttatctgggattgggtgcgtgcagGATGATTTAACAACTAGGAGGTGGCTTAACCAGCTGATGATGAATGTGGGGCAGCAGATGCATCCACAGCGTGTGCCATCAGGAATGCAGGGTGCTGGAA
ttttgat putative branch site (score: 6)
ttttgatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgataaacgaactgttgcttgactacccaaacatttgctttctcgatgatattcgtaggtttgtttcggtttctttttttcttgtttttcttttttgatatatttccgtttatagcacttatctgggattgggtgcgtgcagGATGATTTAACAACTAGGAGGTGGCTTAACCAGCTGATGATGAATGTGGGGCAGCAGATGCATCCACAGCGTGTGCCATCAGGAATGCAGGGTGCTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA