1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtattatgtgtgccttgaaagttttcgtttattttttgcaatcgaagcatgtacttgttgcaatgtggcataattctttgaattgtttgatttctggttggcagtaaagctatgatgtctgtctgcacccgagttgtaaagcaatctatatttatgttgttgatggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTTATTGCTGATAAAGGAATTAAAACCAAACCCCTAAGTTCTTTGAAGTACT
species | Physcomitrella patens |
transcript | PP1S153_101V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAG CTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTTEST: gi|100365650|gb|BY948205.1|BY948205
genomic: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAGgtatgtatta ... tggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTT
EST: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACNATTGGGGGAG CTCCNAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGGTGTEST: gi|208383700|gb|DC928031.1|DC928031
genomic: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAGgtatgtatta ... tggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGG-TGT
EST: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAG CTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTTEST: gi|37827579|gb|BJ585591.1|BJ585591
genomic: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAGgtatgtatta ... tggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTT
EST: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAG CTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTTEST: gi|162206440|gb|FC383433.1|FC383433
genomic: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAGgtatgtatta ... tggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTT
EST: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAG CTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTTEST: gi|162253618|gb|FC430356.1|FC430356
genomic: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAGgtatgtatta ... tggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTT
EST: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAG CTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTTEST: gi|208370447|gb|DC952150.1|DC952150
genomic: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAGgtatgtatta ... tggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTT
EST: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAG CTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTTEST: gi|208354670|gb|DC918696.1|DC918696
genomic: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAGgtatgtatta ... tggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTT
EST: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAG CTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTTEST: gi|37823705|gb|BJ581771.1|BJ581771
genomic: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAGgtatgtatta ... tggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTT
EST: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAG CTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTT
genomic: ACAGCATCAATATTCTATAGAGAGATTACCTGAAGCTACAATTGGGGGAGgtatgtatta ... tggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTT
ctgtctgcacccgagttgtaaagcaatctatatttatgttgttgatggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTTATTGCTGATAAAGGAATTAAAACCAAACCCCTAAGTTCTTTGAAGTACT
tgttgat putative branch site (score: 5)
aatctatatttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattatgtgtgccttgaaagttttcgtttattttttgcaatcgaagcatgtacttgttgcaatgtggcataattctttgaattgtttgatttctggttggcagtaaagctatgatgtctgtctgcacccgagttgtaaagcaatctatatttatgttgttgatggttggcagCTCCAAGAAAGTGATGACCGCGAAGCTCACAAACTTCCATTTGGAGGTGTTATTGCTGATAAAGGAATTAAAACCAAACCCCTAAGTTCTTTGAAGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG