1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagaacctcctcggagttgtactgtagctgttgttgcatcttttttacaatttgcatttgcatcagtacttatccaccaaatacccatgaagtccatctattccccttgtgaggctgttttctggagactataattcccttatttctactatgcatatgatatgatcttaaagctgtcgcgttctgcgtacagGTTGCCCTTTTTTTGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCTATCGATGACGTGGAGATGCGGCGCATAATTAACCTTCTCATTGCTGACC
species | Physcomitrella patens |
transcript | PP1S152_49V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAATGTGGGATGCACTTGGTTCGATAGTTGTAGGTGGCTTGCTCGGTGGG GTTGCCCNNNNNNNGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCTEST: gi|162257102|gb|FC432562.1|FC432562
genomic: CAATGTGGGATGCACTTGGTTCGATAGTTGTAGGTGGCTTGCTCGGTGGGgtaagaacct ... ctgcgtacagGTTGCCCTTTTTTTGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCT
EST: CAATGTGGGATGCACTTGGTTCGATAGTTGTAGGTGGCTTGCTCGGTGGG GTTGCCCNNNNNNNGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCTEST: gi|162173792|gb|FC349968.1|FC349968
genomic: CAATGTGGGATGCACTTGGTTCGATAGTTGTAGGTGGCTTGCTCGGTGGGgtaagaacct ... ctgcgtacagGTTGCCCTTTTTTTGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCT
EST: CAATGTGGGATGCACTTGGTTCGATAGTTGTAGGTGGCTTGCTCGGTGGG GTTGCCCNNNNNNNGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCTEST: gi|162261277|gb|FC437294.1|FC437294
genomic: CAATGTGGGATGCACTTGGTTCGATAGTTGTAGGTGGCTTGCTCGGTGGGgtaagaacct ... ctgcgtacagGTTGCCCTTTTTTTGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCT
EST: CAATGTGGGATGCACTTGGTTCGATAGTTGTAGGTGGCTTGCTCGGTGGG GTTGCCCNNNNNNNGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCTEST: gi|162173793|gb|FC349969.1|FC349969
genomic: CAATGTGGGATGCACTTGGTTCGATAGTTGTAGGTGGCTTGCTCGGTGGGgtaagaacct ... ctgcgtacagGTTGCCCTTTTTTTGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCT
EST: CAATGTGGGATGCACTTGGTTCGATAGTTGTAGGTGGCTTGCTCGGTGGG GTTGCCCNNNNNNNGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCT
genomic: CAATGTGGGATGCACTTGGTTCGATAGTTGTAGGTGGCTTGCTCGGTGGGgtaagaacct ... ctgcgtacagGTTGCCCTTTTTTTGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCT
cttatttctactatgcatatgatatgatcttaaagctgtcgcgttctgcgtacagGTTGCCCTTTTTTTGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCTATCGATGACGTGGAGATGCGGCGCATAATTAACCTTCTCATTGCTGACC
atatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacctcctcggagttgtactgtagctgttgttgcatcttttttacaatttgcatttgcatcagtacttatccaccaaatacccatgaagtccatctattccccttgtgaggctgttttctggagactataattcccttatttctactatgcatatgatatgatcttaaagctgtcgcgttctgcgtacagGTTGCCCTTTTTTTGATTCAACGGAATAGACAAGCACTGCTGGGTCGATCTATCGATGACGTGGAGATGCGGCGCATAATTAACCTTCTCATTGCTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG