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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcactgtttgggaaatccatttttggaaactgaaatcactaattccttcagtgcaacatttttatgttgtatgcaacttttcgctcaacttcgtgggttttacaagtttgttgtgcatacattgaaatcgaaattatcttctgcagGCGCTAAAGCTAGGACAATTGCCCTCGGATATTGTGCTACCCGGGAATGATACTTCAGGTAAGCCTGTAACAGACACCAACAGTGACGGTCCGCCAAATA

Basic information

species Physcomitrella patens
transcript PP1S152_48V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37838587|gb|BJ596595.1|BJ596595
EST:     CTGCCATCGCAAATTCACAGACACTTGAAGAAGTTGCCAGGCTTGAAAAG                         GCGCTAAAGCTAGGACAATTGCCCTCGGATATTGTGCTACCCGGGAATGAT
genomic: CTGCCATCGCAAATTCACAGACACTTGAAGAAGTTGCCAGGCTTGAAAAGgtagcactgt ... tcttctgcagGCGCTAAAGCTAGGACAATTGCCCTCGGATATTGTGCTACCCGGGAATGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgggttttacaagtttgttgtgcatacattgaaatcgaaattatcttctgcagGCGCTAAAGCTAGGACAATTGCCCTCGGATATTGTGCTACCCGGGAATGATACTTCAGGTAAGCCTGTAACAGACACCAACAGTGACGGTCCGCCAAATA
                                          ttatcttct  CT-rich tract
                                       aaattatctt  TA-rich tract