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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAAGGTAGAGTTTGGGTTGCCTGATCTGGAAAGCCGAACCCAGATTTTCAAG

Basic information

species Physcomitrella patens
transcript PP1S152_13V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208364215|gb|DC947291.1|DC947291
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|208368723|gb|DC947956.1|DC947956
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|162256307|gb|FC432317.1|FC432317
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|208350436|gb|DC926183.1|DC926183
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|37847976|gb|BJ605984.1|BJ605984
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|67720349|gb|BJ970608.1|BJ970608
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|162267487|gb|FC444238.1|FC444238
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|208366359|gb|DC947569.1|DC947569
EST:     GACGGTTTCGTTGCTCGTGGTAGTATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|67579074|gb|BJ951225.1|BJ951225
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|67694853|gb|BJ955086.1|BJ955086
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|67720715|gb|BJ970974.1|BJ970974
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTNTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|162257096|gb|FC432556.1|FC432556
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAAGGTAGAGTTTGGGTTGCCTGATCTGGAAAGCCGAACCCAGATTTTCAAG
                                             ttttttac  CT-rich tract
                                             ttttttaca  TA-rich tract