1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtgcctatgagcaaatgcacgttcgatgacattgaatggaatccgaacaacattgacaccacttgcactggtactaagtacttgattcatggcccccttttgcagATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGACATCATGGGCGAGCGAGGTGGAAGGTTGGCTGCAGCAGGTCTCTACGGAA
species | Physcomitrella patens |
transcript | PP1S150_124V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAG ATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGACEST: gi|162190449|gb|FC365671.1|FC365671
genomic: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAGgtgagtgcct ... ccttttgcagATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGAC
EST: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAG ATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGACEST: gi|162186018|gb|FC361846.1|FC361846
genomic: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAGgtgagtgcct ... ccttttgcagATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGAC
EST: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAG ATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGACEST: gi|100390444|gb|BY952852.1|BY952852
genomic: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAGgtgagtgcct ... ccttttgcagATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGAC
EST: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAG ATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGACEST: gi|162171995|gb|FC347923.1|FC347923
genomic: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAGgtgagtgcct ... ccttttgcagATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGAC
EST: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAG ATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGACEST: gi|162254064|gb|FC429380.1|FC429380
genomic: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAGgtgagtgcct ... ccttttgcagATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGAC
EST: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAG ATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGAC
genomic: ATTCACCTGACCTCGACGTGGTTGCCAAAGTTCTCAAGGACGTCTTCGAGgtgagtgcct ... ccttttgcagATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGAC
cattgacaccacttgcactggtactaagtacttgattcatggcccccttttgcagATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGACATCATGGGCGAGCGAGGTGGAAGGTTGGCTGCAGCAGGTCTCTACGGAA
cccccttttgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcctatgagcaaatgcacgttcgatgacattgaatggaatccgaacaacattgacaccacttgcactggtactaagtacttgattcatggcccccttttgcagATCGAAACCACCACACTTGAGGAAAGAAAGATAGTACACGAGGTGTGTGACATCATGGGCGAGCGAGGTGGAAGGTTGGCTGCAGCAGGTCTCTACGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG