1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agatcaggttttattcttggggttgacaaccgtatttttcttttgcactttttcagcgaggaatttatgatgttttgtggctgatttttatatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTCGCCATCCGAGCTGATCGTGACTATGTTGTTCAAGAGGATTTCATGAAG
species | Physcomitrella patens |
transcript | PP1S13_419V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAG GGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTCEST: gi|18335003|gb|BJ167021.1|BJ167021
genomic: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAGgtacagtatt ... tatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTC
EST: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAG GGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTCEST: gi|37843655|gb|BJ601663.1|BJ601663
genomic: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAGgtacagtatt ... tatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTC
EST: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAG GGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTCEST: gi|37849919|gb|BJ607927.1|BJ607927
genomic: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAGgtacagtatt ... tatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTC
EST: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAG GGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTCEST: gi|162188781|gb|FC364067.1|FC364067
genomic: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAGgtacagtatt ... tatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTC
EST: TTACGAACCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAG GGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTCEST: gi|67721370|gb|BJ971629.1|BJ971629
genomic: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAGgtacagtatt ... tatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTC
EST: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAG GGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTCEST: gi|208367874|gb|DC955337.1|DC955337
genomic: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAGgtacagtatt ... tatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTC
EST: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAG GGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTCEST: gi|37853467|gb|BJ611475.1|BJ611475
genomic: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAGgtacagtatt ... tatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTC
EST: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAG GGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTC
genomic: TTACGAAGCATGGAGAGATTGATTACGAGGCTATTGTTAAACTTGCCGAGgtacagtatt ... tatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTC
cactttttcagcgaggaatttatgatgttttgtggctgatttttatatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTCGCCATCCGAGCTGATCGTGACTATGTTGTTCAAGAGGATTTCATGAAG
ggctgat putative branch site (score: 4)
tttttat CT-rich tract
tgatttttatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatcaggttttattcttggggttgacaaccgtatttttcttttgcactttttcagcgaggaatttatgatgttttgtggctgatttttatatattccagGGCTTTAACGGAGCTGATCTTCGAAATGTCTGTACTGAAGCGGGCATGTTCGCCATCCGAGCTGATCGTGACTATGTTGTTCAAGAGGATTTCATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT