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gtaagtctgtatacacatctgtctgcaaatgcgactagtgttcttgtggttttagagcagttcatcttataaatatattttgacagtgatgtcttgctttactaagttgtaaattacatttctttttcttttctaaagagggtggcttctttatttttatttcagATTTCAGGACATAGAACCCGCAGCAACAAGGTCTTTTTTCACTGAGATTATCTCTTCTATCTCTGACATTAAGTTTGTAAGGAGTGGTCGATACATTCTT
species | Physcomitrella patens |
transcript | PP1S138_11V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTGACACACACGCAAAACT ATTTCAGGACATAGAACCCGCAGCAACAAGGTCTTTTTTCACTGAGATTATEST: gi|162253176|gb|FC429112.1|FC429112
genomic: TGTGACACACACGCAAAACTgtaagtctgt ... tttatttcagATTTCAGGACATAGAACCCGCAGCAACAAGGTCTTTTTTCACTGAGATTAT
EST: CGGCTCATTGACATGCGCCAGTCAGCTCTTTGTGACACACACGCAAAACT ATTTCAGGACATAGAACCCGCAGCAACAAGGTCTTTTTTCACTGAGATTAT
genomic: CGGCTCATTGACATGCGCCAGTCAGCTCTTTGTGACACACACGCAAAACTgtaagtctgt ... tttatttcagATTTCAGGACATAGAACCCGCAGCAACAAGGTCTTTTTTCACTGAGATTAT
aaattacatttctttttcttttctaaagagggtggcttctttatttttatttcagATTTCAGGACATAGAACCCGCAGCAACAAGGTCTTTTTTCACTGAGATTATCTCTTCTATCTCTGACATTAAGTTTGTAAGGAGTGGTCGATACATTCTT
ttctaaa putative branch site (score: 2)
cttctttatttttatt putative PPT
ttctttatttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctgtatacacatctgtctgcaaatgcgactagtgttcttgtggttttagagcagttcatcttataaatatattttgacagtgatgtcttgctttactaagttgtaaattacatttctttttcttttctaaagagggtggcttctttatttttatttcagATTTCAGGACATAGAACCCGCAGCAACAAGGTCTTTTTTCACTGAGATTATCTCTTCTATCTCTGACATTAAGTTTGTAAGGAGTGGTCGATACATTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG