1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ggacaaacagttcgaacatgattgctggatctggtcttgatcatatatgtatctcttgcttgaattttgttctaattcattccatccgccttctgtgtagGTCTTTAACAGAAATGTGGACAAAGAGACAGTGTGCTTGCTGGCAGCTAGGGCTTCAAGAGTGGAAAACCAAGATGCTATTGATGCAGCCATAGTTGGAA
species | Physcomitrella patens |
transcript | PP1S137_291V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGGAACTCTAACTTTGAACAAGTTGACAGTTGACAAAAGCTTGGTGGAG GTCTTTAACAGAAATGTGGACAAAGAGACAGTGTGCTTGCTGGCAGCTAGGEST: gi|162255510|gb|FC431300.1|FC431300
genomic: CAGGAACTCTAACTTTGAACAAGTTGACAGTTGACAAAAGCTTGGTGGAGgtaaagctca ... ttctgtgtagGTCTTTAACAGAAATGTGGACAAAGAGACAGTGTGCTTGCTGGCAGCTAGG
EST: CAGGAACTCTAACTTTGAACAAGTTGACAGTTGACAAAAGCTTGGTGGAG GTCTTTAACAGAAATGTGGACAAAGAGACAGTGTGCTTGCTGGCAGCTAGGEST: gi|162263542|gb|FC439571.1|FC439571
genomic: CAGGAACTCTAACTTTGAACAAGTTGACAGTTGACAAAAGCTTGGTGGAGgtaaagctca ... ttctgtgtagGTCTTTAACAGAAATGTGGACAAAGAGACAGTGTGCTTGCTGGCAGCTAGG
EST: CAGGAACTCTAACTTTGAACAAGTTGACAGTTGACAAAAGCTTGGTGGAG GTCTTTAACAGAAATGTGGACAAAGAGACAGTGTGCTTGCTGGCAGCTAGG
genomic: CAGGAACTCTAACTTTGAACAAGTTGACAGTTGACAAAAGCTTGGTGGAGgtaaagctca ... ttctgtgtagGTCTTTAACAGAAATGTGGACAAAGAGACAGTGTGCTTGCTGGCAGCTAGG
tatgtatctcttgcttgaattttgttctaattcattccatccgccttctgtgtagGTCTTTAACAGAAATGTGGACAAAGAGACAGTGTGCTTGCTGGCAGCTAGGGCTTCAAGAGTGGAAAACCAAGATGCTATTGATGCAGCCATAGTTGGAA
ttctaat putative branch site (score: 42)
ttccatccgccttct putative PPT
aattttgttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggacaaacagttcgaacatgattgctggatctggtcttgatcatatatgtatctcttgcttgaattttgttctaattcattccatccgccttctgtgtagGTCTTTAACAGAAATGTGGACAAAGAGACAGTGTGCTTGCTGGCAGCTAGGGCTTCAAGAGTGGAAAACCAAGATGCTATTGATGCAGCCATAGTTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - tgctgga