1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtattttgttactattggattcaattttggtcatttctcactttatttttttattattttgaagccttcatttcaattttctacatgacagcactaacgtgaatgtgtaaacgaaggttgtgtttgctcgactgacgctattgtactagttcacttgttgttcctgaaataacctttggagtgttcgcagGGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTTGTAGCTGATGGTGGGGAATGTTTTGTTGCACAAAGTTATGCTAAGAACA
species | Physcomitrella patens |
transcript | PP1S132_95V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAG GGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTTEST: gi|67726923|gb|BJ977182.1|BJ977182
genomic: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAGgtattttgtt ... gtgttcgcagGGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTT
EST: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAG GGATTCGCTAGTGGAAGTCTGGACCAAGACGCCCATGCTGTTCGCTTATTTEST: gi|67718471|gb|BJ968730.1|BJ968730
genomic: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAGgtattttgtt ... gtgttcgcagGGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTT
EST: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAG GGATTCGCTAGTGGEST: gi|100356048|gb|BY946170.1|BY946170
genomic: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAGgtattttgtt ... gtgttcgcagGGATTCGCTAGTGG
EST: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAG GGATTCGCTAGTGGAAGTCTGGACAAAGAEST: gi|100446010|gb|CJ970309.1|CJ970309
genomic: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAGgtattttgtt ... gtgttcgcagGGATTCGCTAGTGGAAGTCTGGACAAAGA
EST: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTNGACTGTGCATACCAG GGATTCNCTAGTGGAEST: gi|162196336|gb|FC375406.1|FC375406
genomic: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAGgtattttgtt ... gtgttcgcagGGATTCGCTAGTGGA
EST: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAG GGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTTEST: gi|162267156|gb|FC443387.1|FC443387
genomic: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAGgtattttgtt ... gtgttcgcagGGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTT
EST: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAG GGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTTEST: gi|162263809|gb|FC438428.1|FC438428
genomic: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAGgtattttgtt ... gtgttcgcagGGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTT
EST: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAA GGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTT
genomic: AGGTTATTAGAAGCAAGCATCAGCTTCCCTTTTTTGACTGTGCATACCAGgtattttgtt ... gtgttcgcagGGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTT
cgctattgtactagttcacttgttgttcctgaaataacctttggagtgttcgcagGGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTTGTAGCTGATGGTGGGGAATGTTTTGTTGCACAAAGTTATGCTAAGAACA
aaataac putative branch site (score: 2)
tgaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttgttactattggattcaattttggtcatttctcactttatttttttattattttgaagccttcatttcaattttctacatgacagcactaacgtgaatgtgtaaacgaaggttgtgtttgctcgactgacgctattgtactagttcacttgttgttcctgaaataacctttggagtgttcgcagGGATTCGCTAGTGGAAGTCTGGACAAAGACGCCCATGCTGTTCGCTTATTTGTAGCTGATGGTGGGGAATGTTTTGTTGCACAAAGTTATGCTAAGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC