1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattgattttctgtacaatcttgtaaacagtcgttactcatttgcaatccaggaatattgtctctttgcaatgtggtatggttgtctgtatccttgcagagctagttatcagtgatgctatcactttatctccatcgaaatacataaaccaaccgatatgtatgggttgtaattggcagCTCCACGAAAGTGAAGACTAGTAAGCTTATACATTTCTGTATGGCGGTGTGCTTGCTAATACTGAAGTCGGAGTCAAATCTCAAAGCTCTTCGAAGTACT
species | Physcomitrella patens |
transcript | PP1S11_99V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAGCACCAATACTCGATTGAGAGGTTACCTGAAGCTACAATAGGAGGAG CTCCACGAAAGTGAAGACTAGTAAGCTTATACATTTCTGTATGGCGGTGTGEST: gi|67694552|gb|BJ954785.1|BJ954785
genomic: GCAGCACCAATACTCGATTGAGAGGTTACCTGAAGCTACAATAGGAGGAGgtattgattt ... taattggcagCTCCACGAAAGTGAAGACTAGTAAGCTTATACATTTCTGTATGGCGGTGTG
EST: GAGAGGTTACCTGAAGCTACAATAGGAGGAG CTCCACGAAAGTGAAGACTAGTAAGCTTATACATTTCTGTATGGCGGTGTGEST: gi|208348150|gb|DC920941.1|DC920941
genomic: GAGAGGTTACCTGAAGCTACAATAGGAGGAGgtattgattt ... taattggcagCTCCACGAAAGTGAAGACTAGTAAGCTTATACATTTCTGTATGGCGGTGTG
EST: GCAGCACCAATACTCGATTGAGAGGTTACCTGAAGCTACAATAGGAGGAG CTCCACGAAAGTGAAGACTAGTAAGCTTATACATTTCTGTATGGCGGTGTG
genomic: GCAGCACCAATACTCGATTGAGAGGTTACCTGAAGCTACAATAGGAGGAGgtattgattt ... taattggcagCTCCACGAAAGTGAAGACTAGTAAGCTTATACATTTCTGTATGGCGGTGTG
tttatctccatcgaaatacataaaccaaccgatatgtatgggttgtaattggcagCTCCACGAAAGTGAAGACTAGTAAGCTTATACATTTCTGTATGGCGGTGTGCTTGCTAATACTGAAGTCGGAGTCAAATCTCAAAGCTCTTCGAAGTACT
aaatacataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgattttctgtacaatcttgtaaacagtcgttactcatttgcaatccaggaatattgtctctttgcaatgtggtatggttgtctgtatccttgcagagctagttatcagtgatgctatcactttatctccatcgaaatacataaaccaaccgatatgtatgggttgtaattggcagCTCCACGAAAGTGAAGACTAGTAAGCTTATACATTTCTGTATGGCGGTGTGCTTGCTAATACTGAAGTCGGAGTCAAATCTCAAAGCTCTTCGAAGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG