1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaaacctccgattgtagtttgaacacggggtggagtggatattgttattgacatttcatagcctcgtgatcaattaatagttacaaaaattttggagctccaaaattttcgtaattattatttgatattaatcttggtcagtttgtatgcattatgtccatgtatatctgatcggtttttgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGCCAGTCGCGGAAGGCGCCAGTGCCTAGATCGCGGCGAAGATAGACACGCC
species | Physcomitrella patens |
transcript | PP1S119_137V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAG GTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGCEST: gi|162183957|gb|FC359327.1|FC359327
genomic: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAGgtgaaacctc ... tgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGC
EST: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAG GTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGCEST: gi|208349645|gb|DC922035.1|DC922035
genomic: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAGgtgaaacctc ... tgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGC
EST: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAGGAAAG GTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGCEST: gi|37846434|gb|BJ604442.1|BJ604442
genomic: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAGgtgaaacctc ... tgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGC
EST: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAG GTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGCEST: gi|67720808|gb|BJ971067.1|BJ971067
genomic: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAGgtgaaacctc ... tgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGC
EST: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAG GTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGCEST: gi|162161201|gb|FC337264.1|FC337264
genomic: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAGgtgaaacctc ... tgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGC
EST: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAG GTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGCEST: gi|67693067|gb|BJ953300.1|BJ953300
genomic: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAGgtgaaacctc ... tgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGC
EST: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAG GTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGCEST: gi|67724793|gb|BJ975052.1|BJ975052
genomic: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAGgtgaaacctc ... tgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGC
EST: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAG GTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGC
genomic: AGCGTTGGGTACCAAGTCCAAGAAAAAGGGCGGTGGCAAGAAGAAGAAAGgtgaaacctc ... tgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGC
tggtcagtttgtatgcattatgtccatgtatatctgatcggtttttgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGCCAGTCGCGGAAGGCGCCAGTGCCTAGATCGCGGCGAAGATAGACACGCC
ttttgat putative branch site (score: 9)
ttttt CT-rich tract
atgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaacctccgattgtagtttgaacacggggtggagtggatattgttattgacatttcatagcctcgtgatcaattaatagttacaaaaattttggagctccaaaattttcgtaattattatttgatattaatcttggtcagtttgtatgcattatgtccatgtatatctgatcggtttttgatgtgcagGTAAGAAAGGTGATGCCATGATTGAGGATACTCCTGAGGCTACTGCTGAGCCAGTCGCGGAAGGCGCCAGTGCCTAGATCGCGGCGAAGATAGACACGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA