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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcgcatgaaaatgtgttggcgttcagatcatttacttttctaccaagccaagtttgattttggttttgatttcgatttcatttcttaaatcttttgcagAAGTAAGCAATCAGATGTTGGAGCTTTACGAGCAGAACAGAACTAACGGCGCAACTGGGCCACTGGCTAACGAACTAAGCCCCAGTGAACTAGATCGAGG

Basic information

species Physcomitrella patens
transcript PP1S119_132V6.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S119_132V6.2 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GLYMA07G35010.1 (Glycine max), 3'ss of exon 5
------ctcgcatgaaaatgtgttggcgttcagatcatttacttttctaccaagccaagtttgattttggttttgatttcgatttcatttcttaaatcttttgcagAAGTAAGCAATCAGATGTTGGAGCTTTACGAGCAGAACAGAACTAACGGCGCAACTGGGCCACTGGCTAACGAACTAAGCCCCAGTG-AACTAGATCGAGG--
       | || |   | |   ||  |  |  | |  |    || | |  |        | ||  | |  || | | |||   |   | | ||    || |||||||||| |||||||| |||||||| || ||||||||||| ||| ||  |  |   || |||        ||  |||  |||  |  | | ||| ||| |      
cagtttattgc-tatgagtagtttaacaat-gggttgtccttttgtgtgtctgtatgcttctgtatatccttctcagttcttgtgggtatttt----ctcttgcagAAGTTAGCAATCAAATGTTGGAACTCTACGAGCAGAATAGA-CTTCCACCAGCACAGGGAAGTGAAGTA--GAAGGAAGTGCTGGAGGAACAAGAGCTGCTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagccaagtttgattttggttttgatttcgatttcatttcttaaatcttttgcagAAGTAAGCAATCAGATGTTGGAGCTTTACGAGCAGAACAGAACTAACGGCGCAACTGGGCCACTGGCTAACGAACTAAGCCCCAGTGAACTAGATCGAGG
                   ttttgat  putative branch site (score: 4)
                                             tcttttgc  putative PPT
                              atttcatttcttaaat  TA-rich tract