Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttcatgttacccaattcatcgtccttaatcctttgataacatattagtaattttatgatatttaagacgtggaattctacatttctgaatgtagcagctctttgtgaaatgggtgattttcagGGAAAGAATAACCCAACAGACTTAACACCTCCAACAACATCAGATATTTCCACAATTATGTACACTAGTGGCACAACTGGTGAACCCAAGGGAGTACTCT

Basic information

species Physcomitrella patens
transcript PP1S113_124V6.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S113_124V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: GRMZM2G152127_T01 (Zea mays), 3'ss of exon 8
----------------------------------------gtaggtttcatgttacccaatt-----catcgtccttaatc----ctttgataacatattagtaattttatg-----atatttaagacgtggaattctacatttctgaatgtagcagctctttgtgaaatgggtgattttcagGGAAAGAATAACCCAACAGACTTAACACCTCCAACAACATCAGATATTTCCACAATTATGTACACTAGTGGCACAACTGGTGAACCCAAGGGAGTACTCT
                                         || ||     |||||   | |      |  ||  | |  |     ||| ||  || |||  ||  ||| ||     ||  ||  ||     |   ||  || | | | |     |  | ||| |    ||    |    ||||||   ||  |       ||  |  ||||      ||     || || |  ||||| |||||||| ||||| ||||||||||| || |||||||||||  
gtaaggttctcctttcctgaccaaatcacacatggaatgaataagtgcttagttacaagaatattaataatgtgttaaggcatgtttttcatttcaaatttatacatttttgggggcatccttgcgagaaatatgccttgatatatcagttagaaaattattttttttctgttctaccaacagGGAGGTAAAGAGAAGTTTGAACTTCCACCCAAGGAAAAGGATGACATATGTACAATAATGTACACCAGTGGAACAACTGGTGATCCTAAGGGAGTACTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggaattctacatttctgaatgtagcagctctttgtgaaatgggtgattttcagGGAAAGAATAACCCAACAGACTTAACACCTCCAACAACATCAGATATTTCCACAATTATGTACACTAGTGGCACAACTGGTGAACCCAAGGGAGTACTCT
                                                ttttc  CT-rich tract
         tacattt  TA-rich tract