1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gaggcaggaggatcatgtgggtcagctgaaatcagctctttggtctttttagatgtaaactaatggttacctcattcaatctttctttctaattgtgcagGATGAAGAAAAGAGTAAAAAGGGACTGGGAGAAATTTATGAG
species | Physcomitrella patens |
transcript | PP1S102_17V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACCTAGAGCTCCACCAGTTACAGCTGCTCCCAAAGAACGCATGGAAATG GATGAAGAAAAGAGTAAAAAGGGACTGGGAGAAATTTATGAGEST: gi|100452440|gb|CJ975272.1|CJ975272
genomic: AACCTAGAGCTCCACCAGTTACAGCTGCTCCCAAAGAACGCATGGAAATGgtacttttca ... aattgtgcagGATGAAGAAAAGAGTAAAAAGGGACTGGGAGAAATTTATGAG
EST: AACCTAGAGCTCCACCAGTTACAGCTGCTCCCAAAGAACGCATGGAAATG GATGAAGAAAAGAGTAAAA-GGGACTGGGAGAA-TTTATGAGEST: gi|100447929|gb|CJ972228.1|CJ972228
genomic: AACCTAGAGCTCCACCAGTTACAGCTGCTCCCAAAGAACGCATGGAAATGgtacttttca ... aattgtgcagGATGAAGAAAAGAGTAAAAAGGGACTGGGAGAAATTTATGAG
EST: AACCTAGAGCTCCACCAGTTACAGCTGCTCCCAAAGAACGCATGGAAATG GATGAAGAAAAGAGTAAAAAGGGACTGGGAGAAATTTATGAG
genomic: AACCTAGAGCTCCACCAGTTACAGCTGCTCCCAAAGAACGCATGGAAATGgtacttttca ... aattgtgcagGATGAAGAAAAGAGTAAAAAGGGACTGGGAGAAATTTATGAG
tttttagatgtaaactaatggttacctcattcaatctttctttctaattgtgcagGATGAAGAAAAGAGTAAAAAGGGACTGGGAGAAATTTATGAG
ttctaat putative branch site (score: 2)
tctttctttctaatt CT-rich tract
taaactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggcaggaggatcatgtgggtcagctgaaatcagctctttggtctttttagatgtaaactaatggttacctcattcaatctttctttctaattgtgcagGATGAAGAAAAGAGTAAAAAGGGACTGGGAGAAATTTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA