1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaactcgtgcttacattttttttggtcgtgttttgtaatcatgttcgtggtggcaaatgtaacttctaaattcgttttaacctggtctggcgttacagagCCAAGTTTGGCATAAAAGAGATGTGTCGTGATCAATGGAATTGGGCAAAAACGAACCCGTATGGATATCGAGGCCAACAAGAACTGGAGGTCACCACACA
species | Physcomitrella patens |
transcript | PP1S101_67V6.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG AEST: gi|208388227|gb|DC956977.1|DC956977
genomic: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAGgtgatttatt ... cgttacagag-
EST: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG AEST: gi|208388227|gb|DC956977.1|DC956977
genomic: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAGgtgatttatt ... cgttacagag-
EST: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG AEST: gi|37821921|gb|BJ579987.1|BJ579987
genomic: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAGgtgatttatt ... cgttacagag-
EST: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG CCAAGTTTGGCATAAAAGAGATGTGTCGTGATCAATGGAATTGGGCAAAAAEST: gi|208382034|gb|DC919921.1|DC919921
genomic: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAGgtgatttatt ... cgttacagagCCAAGTTTGGCATAAAAGAGATGTGTCGTGATCAATGGAATTGGGCAAAAA
EST: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG AEST: gi|208382034|gb|DC919921.1|DC919921
genomic: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAGgtgatttatt ... cgttacagag-
EST: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG AEST: gi|208382034|gb|DC919921.1|DC919921
genomic: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAGgtgatttatt ... cgttacagag-
EST: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG AEST: gi|37830550|gb|BJ588562.1|BJ588562
genomic: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAGgtgatttatt ... cgttacagag-
EST: AAAGCAGAAAAGGAGTTAGGTTGGAGAGEST: gi|208351996|gb|DC925805.1|DC925805
genomic: AAAGCAGAAAAGGAGTTAGGTT-G-GAGgtgatttatt ... cgttacaga
EST: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG AEST: gi|208351996|gb|DC925805.1|DC925805
genomic: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAGgtgatttatt ... cgttacagag-
EST: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG AEST: gi|208351996|gb|DC925805.1|DC925805
genomic: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAGgtgatttatt ... cgttacagag-
EST: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAG A
genomic: AGTGAGGTCTTTGCTTCAACTGAGAAAGCAGAAAAGGAGTTAGGTTGGAGgtgatttatt ... cgttacagag-
cgtggtggcaaatgtaacttctaaattcgttttaacctggtctggcgttacagagCCAAGTTTGGCATAAAAGAGATGTGTCGTGATCAATGGAATTGGGCAAAAACGAACCCGTATGGATATCGAGGCCAACAAGAACTGGAGGTCACCACACA
ttttaac putative branch site (score: 42)
taaattcgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaactcgtgcttacattttttttggtcgtgttttgtaatcatgttcgtggtggcaaatgtaacttctaaattcgttttaacctggtctggcgttacagagCCAAGTTTGGCATAAAAGAGATGTGTCGTGATCAATGGAATTGGGCAAAAACGAACCCGTATGGATATCGAGGCCAACAAGAACTGGAGGTCACCACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG