1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gattgcatgatccctatactgtttttacgtgtgagattttcttgtccctcctgcccaaatcactttgaggttgacttggctgaattctgatgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAAGTTTGAGGCAGCTAAGGAAGTCCTTGTACAGATGGGCACATACTTCCAAGTCCAG
species | Physcomitrella patens |
transcript | PP1S101_225V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCCT GTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAAGTTTGAGEST: gi|162152920|gb|FC329222.1|FC329222
genomic: ATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCCTgtaaggttcc ... tgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAAGTTTGAG
EST: ATCTGCGAATCGTANAATACAAAACTGCATATTATTCATTTTATCTTCCT GTGGCATGTGCCTTGCTTTTAGCTGGEST: gi|100401204|gb|BY990883.1|BY990883
genomic: ATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCCTgtaaggttcc ... tgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGG
EST: ATCTGCGAATCGTANAATACAAAACTGCATATAATTCATTTTATCTTCCT GTGGCATGTGCCTTGCTTTTAGCTGGEST: gi|100361028|gb|BY946877.1|BY946877
genomic: ATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCCTgtaaggttcc ... tgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGG
EST: TCTGCGAATCGTAAAATACAAAACTGCATATAATTCATTTTATCTCCCNT GTG-CATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAAGTTTGAEST: gi|162230234|gb|FC406590.1|FC406590
genomic: TCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCC-Tgtaaggttcc ... tgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAAGTTTGA
EST: ATCTGCGAATCGTANAATACAAAACTGCATATTATTCATTTTATCTTCCT GTGGCATGTGCCTTGCTTTTAGCTGGNGAGACGAGCGTGGCCCAGTTTGAGEST: gi|100383945|gb|BY987202.1|BY987202
genomic: ATCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCCTgtaaggttcc ... tgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAAGTTTGAG
EST: TCTGCGAATCGTAAAATACAAAAACTGCATATTATTCATTTTATCTTCCT GTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAAGTTTGAGEST: gi|100402689|gb|BY954960.1|BY954960
genomic: TCTGCGAATCGTAAAATACAAAA-CTGCATATTATTCATTTTATCTTCCTgtaaggttcc ... tgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAAGTTTGAG
EST: TCTGCGAATCGTAAAATACAAAACTGCATATAATTCATTTTATCT-CCNT GTGGAAGGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTG-CCAAAGTTTGEST: gi|100396655|gb|BY990233.1|BY990233
genomic: TCTGCGAATCGTAAAATACAAAACTGCATATTATTCATTTTATCTTCC-Tgtaaggttcc ... tgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAA-GTTTG
EST: CTGCGAATCGTAAAATANCAAA-CTGCATATNATTCATTTTTATCT-CCT GTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAG
genomic: CTGCGAATCGTAAAATA-CAAAACTGCATATTATTCATTTT-ATCTTCCTgtaaggttcc ... tgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAG
ccctcctgcccaaatcactttgaggttgacttggctgaattctgatgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAAGTTTGAGGCAGCTAAGGAAGTCCTTGTACAGATGGGCACATACTTCCAAGTCCAG
ttctgat putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgcatgatccctatactgtttttacgtgtgagattttcttgtccctcctgcccaaatcactttgaggttgacttggctgaattctgatgtgttgcagGTGGCATGTGCCTTGCTTTTAGCTGGGGAGACGAGCGTGGCCAAGTTTGAGGCAGCTAAGGAAGTCCTTGTACAGATGGGCACATACTTCCAAGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG