1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattgaaactcctctccatgattgcgctcacctcacataagtagatccgcttggacgaaatcacccgcctttgatttattttcaagaaacttttttcttttcaatgtcatttgaaaacgcgggccgactatcttatgcggttctccaatgttggttgcagGGACAATTGCCTTGGGATTGTTTATCCTGTGCGGTGCAGAAGCAAGAGGGGTACGCCTTTGGCGGAATAATCAAGAGGAACTTCCTTTGTTGGCTCCACA
species | Physcomitrella patens |
transcript | PP1S100_63V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTACATATCGTCTATACTGCACGATGGGCCACATTTTTCTTAATCTGGG GGACAATTGCCTTGGGATTGTTTATCCTGTGCGGTGCAGAAGCAAGAGGGGEST: gi|208400537|gb|DC925287.1|DC925287
genomic: GGTACATATCGTCTATACTGCACGATGGGCCACATTTTTCTTAATCTGGGgtattgaaac ... ttggttgcagGGACAATTGCCTTGGGATTGTTTATCCTGTGCGGTGCAGAAGCAAGAGGGG
EST: GGTACATATCGTTTATACTGCACGATGGGCCACATTTTTCTTAATCTGGG GGACAATTGCCTTGGGATTGTTTATCCTGTGCGGTGCAGAAGCAAGAGGGGEST: gi|208362071|gb|DC950506.1|DC950506
genomic: GGTACATATCGTCTATACTGCACGATGGGCCACATTTTTCTTAATCTGGGgtattgaaac ... ttggttgcagGGACAATTGCCTTGGGATTGTTTATCCTGTGCGGTGCAGAAGCAAGAGGGG
EST: GGTACATATCGTCTATACTGCACGATGGGCCACATTTTTCTTAATCTGGG GGACAATTGCCTTGGGATTGTTTATCCTGTGCGGTGCAGAAGCAAGAGGGG
genomic: GGTACATATCGTCTATACTGCACGATGGGCCACATTTTTCTTAATCTGGGgtattgaaac ... ttggttgcagGGACAATTGCCTTGGGATTGTTTATCCTGTGCGGTGCAGAAGCAAGAGGGG
gtcatttgaaaacgcgggccgactatcttatgcggttctccaatgttggttgcagGGACAATTGCCTTGGGATTGTTTATCCTGTGCGGTGCAGAAGCAAGAGGGGTACGCCTTTGGCGGAATAATCAAGAGGAACTTCCTTTGTTGGCTCCACA
tatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgaaactcctctccatgattgcgctcacctcacataagtagatccgcttggacgaaatcacccgcctttgatttattttcaagaaacttttttcttttcaatgtcatttgaaaacgcgggccgactatcttatgcggttctccaatgttggttgcagGGACAATTGCCTTGGGATTGTTTATCCTGTGCGGTGCAGAAGCAAGAGGGGTACGCCTTTGGCGGAATAATCAAGAGGAACTTCCTTTGTTGGCTCCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA