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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatgcttttctcagtacttcatttcatgattcacgatttccagatcctgttctttgagatctctttattatccttgcaagcatgacatgcaatcttagtgtgttactctgttgcatgtgcagATTGAGTAATGAGGCAAGGTCCGCTATTGCTAGATATCTCACTTTGTACAAG

Basic information

species Physcomitrella patens
transcript PP1S90_95V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208375020|gb|DC956416.1|DC956416
EST:     AGTGGACGCCGTGGAGTTCATTGTTGGGTGTGTGATACACGAGCAAGGAG                         ATTGAGTAATGAGGCAAGGTCCGCTATTGCTAGATATCTCACTTTGTACAA
genomic: AGTGGACGCCGTGGAGTTCATTGTTGGGTGTGTGATACACGAGCAAGGAGgttaatgctt ... gcatgtgcagATTGAGTAATGAGGCAAGGTCCGCTATTGCTAGATATCTCACTTTGTACAA
EST: gi|208386352|gb|DC932848.1|DC932848
EST:     AGTGGACGCCGTGGANTTCATTGTTGGGTGTGTGATACACGAGCAAGGAG                         ATNGAGTANTGAGGCA
genomic: AGTGGACGCCGTGGAGTTCATTGTTGGGTGTGTGATACACGAGCAAGGAGgttaatgctt ... gcatgtgcagATTGAGTAATGAGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatccttgcaagcatgacatgcaatcttagtgtgttactctgttgcatgtgcagATTGAGTAATGAGGCAAGGTCCGCTATTGCTAGATATCTCACTTTGTACAAG
                       aatctta  TA-rich tract