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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcgctcatggcgttggtgttttctcctttctgaccgcgatgtcactttcgagtttatttattttatttgtgtaaattattcaacgttatatgaagctggcgttaaggctaatcttctgagattgtatcgtgttttatggatgtgtacttgtgacagTGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCATGGTGTAGGACGAGTTTTCCATTCTGCTCCCTCTATTGTGCATGCAC

Basic information

species Physcomitrella patens
transcript PP1S90_139V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37837780|gb|BJ595788.1|BJ595788
EST:     TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAA                         TGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
genomic: TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAAgtgagtcgct ... cttgtgacagTGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
EST: gi|162163706|gb|FC339785.1|FC339785
EST:     TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAA                         TGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
genomic: TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAAgtgagtcgct ... cttgtgacagTGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
EST: gi|162209803|gb|FC385737.1|FC385737
EST:     TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAA                         TGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
genomic: TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAAgtgagtcgct ... cttgtgacagTGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
EST: gi|67698886|gb|BJ959119.1|BJ959119
EST:     TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAA                         TGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
genomic: TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAAgtgagtcgct ... cttgtgacagTGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
EST: gi|37828378|gb|BJ586390.1|BJ586390
EST:     TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAA                         TGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
genomic: TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAAgtgagtcgct ... cttgtgacagTGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
EST: gi|208381832|gb|DC923761.1|DC923761
EST:     TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAA                         TGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
genomic: TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAAgtgagtcgct ... cttgtgacagTGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
EST: gi|37848383|gb|BJ606391.1|BJ606391
EST:     TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAA                         TGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA
genomic: TCGATTTGCGGGCCAGGTGTTGAGTTCAAGAAGATAGGCAGAACTATTAAgtgagtcgct ... cttgtgacagTGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaggctaatcttctgagattgtatcgtgttttatggatgtgtacttgtgacagTGAGATTGCAGATAAACACAGATATGGTGTTGTAGAACACTTTGTAGGTCATGGTGTAGGACGAGTTTTCCATTCTGCTCCCTCTATTGTGCATGCAC
    ggctaat  putative branch site (score: 3)
                            tgttttat  TA-rich tract