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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttattgtattcaattttattttctgtaaatcttgtggtttctattgcacatattttgcgaattaataagcactctgttggttaaccacaagttacagctatcaaggttgattctgaaagatgtgtttgagtgctctttcagGGATATTAAGGGCGCCAACATTCTTGTAGACACCAATGGGATGGTGAAACTTGCCGACTTTGGCATGGCGAAGCAT

Basic information

species Physcomitrella patens
transcript PP1S8_299V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S8_299V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ34371 (Selaginella moellendorffii), 3'ss of exon 4
gtacttattgtattcaattttattttctgtaaatcttgtggtttctattgcacatattttgcgaattaataagcactctgttggttaaccacaagttacagctatcaaggttg-attctgaaagatgtgtttgagtg---ctctttcagGGATATTAAGGGCGCCAACATTCTTGTAGACACCAATGGGATGGTGAAACTTGCCGACTTTGGCATGGCGAAGCAT------------------------
                                                                                                   |  | |    || |  || |  | |  |||   | ||    || ||  || || || |||||||| ||||| ||||| || ||||||||  ||||||| ||||  ||||||||||||||||||||                         
-------------------------------------------------------------------------------------------------gtactttttcgagtggcgttttctatgtcgtgccagcgttattcttttatagAGACATCAAGGGCGCAAACATCCTTGTCGATACCAATGGCGTGGTGAAGCTTGGGGACTTTGGCATGGCGAAGCACGTACGTTTTGTGTCTAGTCTGATC

upper sequence: PP1S8_299V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ27940 (Selaginella moellendorffii), 3'ss of exon 3
gtacttattgtattcaattttattttctgtaaatcttgtggtttctattgcacatattttgcgaattaataagcactctgttggttaaccacaagttacagctatcaaggttgattctgaaagatgtgtttgagtgctctttcagGGATATTAAGGGCGCCAACATTCTTGTAGACACCAATGGGATGGTGAAACTTGCCGACTTTGGCATGGCGAAGCAT
                                                                           | |  |    | ||||| | | ||   | |  |||   |||       || | ||||| |||     |||||| || || || ||||||||||| || ||||| ||||| || ||||||||||| || |||||||||||||| || 
----------------------------------------------------------------------gtatgccccttcaactcaccacca-tcacgtatttataggcatatt------aatct-tttgaatgc-----cagGGACATCAAAGGAGCCAACATTCTAGTCGACACTAATGGAATTGTGAAACTTGCTGATTTTGGCATGGCGAAACAC

upper sequence: PP1S8_299V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ31234 (Selaginella moellendorffii), 3'ss of exon 3
gtacttattgtattcaattttattttctgtaaatcttgtggtttctattgcacatattttgcgaattaataagcactctgttggttaaccacaagttacagctatcaaggttg-attctgaaagatgtgtttgagtg---ctctttcagGGATATTAAGGGCGCCAACATTCTTGTAGACACCAATGGGATGGTGAAACTTGCCGACTTTGGCATGGCGAAGCAT
                                                                                                   |  | |    || |  || |  | |  |||   | ||    || ||  || || || |||||||| ||||| ||||| || ||||||||  ||||||| ||||  |||||||||||||| ||||| 
-------------------------------------------------------------------------------------------------gtactttttcgagtggcgttttctatgtcgtgccagcgttattcttttatagAGACATCAAGGGCGCAAACATCCTTGTCGATACCAATGGCGTGGTGAAGCTTGGGGACTTTGGCATGGCCAAGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaagttacagctatcaaggttgattctgaaagatgtgtttgagtgctctttcagGGATATTAAGGGCGCCAACATTCTTGTAGACACCAATGGGATGGTGAAACTTGCCGACTTTGGCATGGCGAAGCAT
                  ggttgat  putative branch site (score: 5)
                                            tgctctttc  putative PPT