1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttcgttccattatcccaagcttacgtgaagagttggccaaaaatggggttagactaggtgacgcatgttttgaagttattacaaattgcttccatagtttagcgacgagctgtgataggttacgcatccaatgaaggtgctaaaatctgttgttcaatatgcaatcgttttttggtggatgatgtgatactgcagAGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAG
species | Physcomitrella patens |
transcript | PP1S89_154V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAA AGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCTEST: gi|162272814|gb|FC448802.1|FC448802
genomic: CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAAgttcgttcca ... gatactgcagAGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCT
EST: CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAA AGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCTEST: gi|208385544|gb|DC956700.1|DC956700
genomic: CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAAgttcgttcca ... gatactgcagAGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCT
EST: CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAA AGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCT
genomic: CCACCACTCTGGCTGTATTGGCTGCTGCCACCCACTTCAAGCTCCATCAAgttcgttcca ... gatactgcagAGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCT
taaaatctgttgttcaatatgcaatcgttttttggtggatgatgtgatactgcagAGGGCCAAGCATGTGTACACCGAAGCCAAGCGGGTACATGATTTTCGAGCTGTAACTGTGCAATCTGAAAG
tgctaaa putative branch site (score: 2)
ttcaatat TA-rich tract