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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgatcttttgcataatttccataatagttgagattttaaatttatctattctcaatgatctgaatcgaacgactcactcactcactcactcattcagttatttatttttgtttagtattttatggtgagtgaacttgcttgagatttagatgcgatgtcatttattgttttttgagcttgtgtagGTAATGACACCTAATCCAGAATGCGCGAGTTTGGATACGACTTTGGTGGATGCACTGCATACAATGCACGATGGGAAATTCCTCCATCTTCCTGTTAAAG

Basic information

species Physcomitrella patens
transcript PP1S87_48V6.4
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S87_48V6.4 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA08G00560.3 (Glycine max), 3'ss of exon 7
gtgcgatcttttgcataatttccataatagttgagattttaaatttatctattctcaatgatctgaatcgaacgactcactcactcactcactcattcagttatttatttttgtttagtattttatggtgagtgaacttgcttgagatttagatgcgatgtcatttattgttttttgagcttgtgtagGTAATGACACCTAATCCAGAATGCGCGAGTTTGGATACGACTTTGGTGGATGCACTGCATACAATGCACGATGGGAAATTCCTCCATCTTCCTGTTAAAG
                        |  |  ||    ||| | |||||| | ||   | |||  ||| | ||| ||    |    | |    |   |||  || |||  || ||      ||||| || | | |        |    | | || ||   |     ||  |  ||      ||  ||||||||||||| || || ||||| || ||     | ||||| ||  |  |||||||||||||||  ||||| |||||||||||| | |||||||||||   ||
-----------------------gttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcct-ttcttttgtttggttctg------attttttgctaaata------ttcagaactgagttgattttcttcttgattcttccctttctaatgtagGTAATGACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacttgcttgagatttagatgcgatgtcatttattgttttttgagcttgtgtagGTAATGACACCTAATCCAGAATGCGCGAGTTTGGATACGACTTTGGTGGATGCACTGCATACAATGCACGATGGGAAATTCCTCCATCTTCCTGTTAAAG
                           tcatttattgtttttt  TA-rich tract