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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactataaaattctttgtaggggcaatgctttgtattttccgtgtgttacttcatgacttggtgtttgacatgatttctaactaggaggatgatggaattgacgcagTACTATGACTTGCTGAACATTTTCAAGCTTAATGGTCTCCCCTCGGAAGAGAATCCTTATCTCTTTAATGGCGACTTTGTTGATCGTGGCTCATTTTCGG

Basic information

species Physcomitrella patens
transcript PP1S87_139V6.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S87_139V6.2 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os05g11550.2 (Oryza sativa), 3'ss of exon 7
---------------------------------------------------------------------gtactataaaat--tctttgtaggggca-atgct----ttgtattttccgtgtg--ttacttcatgacttggtgtttgacatgatttctaactaggaggatgatggaattgac----gcagTACTATGACTTGCTGAACATTTTCAAGCTTAATGGTCTCCCCTCGGAAGAGAATCCTTATCTCTTTAATGGCGACTTTGTTGATCGTGGCTCATTTTCGG
                                                                     | | |  |||||  | || |||    || |||||    || ||  |  | | ||  ||| || || || |  || |  ||       || | | | |   | ||    ||  |    |||||| | ||||||||| || || || ||||| ||||| || |||||||||||||||||||| ||||| ||||| |||||||| ||  | || || ||||| |
gtatttaaattttttgaatgcattgcttttgtttttttcctagtgcttctgggtgtccccttcttttttgaaatggaaaatgatattggtaatttcacatgctaaaattttagctgtcatttgatttagtttattacatattgatatactgacagcctgattggaattgtaatatttttttccactgcagTATTTTGACTTGCTCAATATATTTAAGCTCAATGGGCTTCCCTCGGAAGAGAATCCTTACCTCTTCAATGGAGACTTTGTAGACAGAGGATCTTTTTCTG

upper sequence: PP1S87_139V6.2 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA08G42380.1 (Glycine max), 3'ss of exon 7
gtactataaaattctttgtaggggcaatgctttgtattttccgtgtgttacttcatgacttggtgtttgacat-gatttctaactaggagg-atgatggaattgacgcagTACTATGACTTGCTGAACATTTTCAAGCTTAATGGTCTCCCCTCGGAAGAGAATCCTTATCTCTTTAATGGCGACTTTGTTGATCGTGGCTCATTTTCGG
           || | |   |  |||    ||||  |      ||  ||  ||  |   ||  | ||| || | |   | | | ||| |    |  |  |  |   ||||||||||||  | ||||| |||||  |||||||||| || || || ||||||||||| ||||| |||||||| |||||||| ||| | || || |||||  
-------cttcttttatcctgttgcatcattttgcttggcttttgaatttttttct---ttaatttttaaccttgcaatttcattagtatttgttttccatcttctgcagTACTATGATCTTCTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCGTATCTATTTAATGGTGACTTTGTGGATAGGGGATCTTTTTCAT

upper sequence: PP1S87_139V6.2 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA18G12440.1 (Glycine max), 3'ss of exon 7
gtactataaaattctttgtaggggcaatgc-tttgtattttccgtgtgttacttcatgacttggtgtttgacatgatttctaactaggaggatgatggaattgacgcagTACTATGACTTGCTGAACATTTTCAAGCTTAATGGTCTCCCCTCGGAAGAGAATCCTTATCTCTTTAATGGCGACTTTGTTGATCGTGGCTCATTTTCGG-
       ||  | ||   |    |||  || ||||||||||  || | ||  |   | | ||     ||  ||  |||  | | ||   |  |  ||   |    ||||||||||||  | ||||| |||||  |||||||||| || || || ||||||||||| ||||| |||||||| |||||||| ||| | || || |||||   
------gaaggtcctccatcattgcagggcatttgtattttt-gtatttttatctttaatttttaactttgca-aattcattattatttgttttctgtcttc--tgcagtACTATGATCTTCTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCGTATCTATTTAATGGTGACTTTGTGGATAGGGGATCCTTTTCATT

upper sequence: PP1S87_139V6.2 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT2G42810.1 (Arabidopsis thaliana), 3'ss of exon 7
gtactataaaattctttgtaggggcaatgctttgtattttccgtgtgttacttcatgacttggtgtttgacat--gatttctaactaggaggatgatggaattgacgcagTACTATGACTTGCTGAACATTTTCAAGCTTAATGGTCTCCCCTCGGAAGAGAATCCTTATCTCTTTAATGGCGACTTTGTTGATCGTGGCTCATTTTCGG
        |  ||   | ||  ||| |  |||    |    | ||   || |    |   |  ||| |   ||  | | | |   |   |   || | |  ||   ||||| ||| ||  | || || || ||  |||||||||| ||||| ||||| ||||| || || || ||||||||||||||||| ||  | |||||||| || |
--------atcttgaatttattggctaaccttctactccctcttgcactattaagggctgtattgtgttgtattgggtgtatgtttgacacattgtttgcttt--tgcagTTCTACGATCTTCTCAATATCTTTGAGCTTAATGGCCTCCCTTCGGAGGAGAACCCATACCTATTTAATGGCGACTTTGTGGACAGAGGCTCATTCTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgacttggtgtttgacatgatttctaactaggaggatgatggaattgacgcagTACTATGACTTGCTGAACATTTTCAAGCTTAATGGTCTCCCCTCGGAAGAGAATCCTTATCTCTTTAATGGCGACTTTGTTGATCGTGGCTCATTTTCGG
                     atttctaa  TA-rich tract