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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatttccttatttaaatcttttattacctgtcgctatgtgacattttctgttatgtttcagcgtgcatttactatagtggatgtgcgccgtgtgaccagATTGAACCCTGCATGCTTATCATGCCTGGTACGGGATTGGATCGCGCTTCACAACTGACGGTGTTAATCCCACAGGAGTTAAATTCATCAATCAAGATTT

Basic information

species Physcomitrella patens
transcript PP1S85_168V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67578985|gb|BJ951136.1|BJ951136
EST:     TGCTTTTGGAACATTTTATTCTGGCTGTACGATGGCCCATCCATATGAAG                         ATTGAACCCTGCATGCTTATCATGCCTGGTACGGGATTGGATCGCGCTTCA
genomic: TGCTTTTGGAACATTTTATTCTGGCTGTACGATGGCCCATCCATATGAAGgttagaaatg ... gtgtgaccagATTGAACCCTGCATGCTTATCATGCCTGGTACGGGATTGGATCGCGCTTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgttatgtttcagcgtgcatttactatagtggatgtgcgccgtgtgaccagATTGAACCCTGCATGCTTATCATGCCTGGTACGGGATTGGATCGCGCTTCACAACTGACGGTGTTAATCCCACAGGAGTTAAATTCATCAATCAAGATTT
                      atttactata  TA-rich tract