1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...agagctagtgtggcgattgaacgtttttgtattaatattttacaatttttcagtgtgcgcgcactgctttttcttttttgaataattggttggtgaacagAGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGGCTTTGTTTCTTTCAGAAGTCAGCAG
species | Physcomitrella patens |
transcript | PP1S84_50V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGACCGATGCAACTTTGTTTGCTGCATTTTGTGTCTATCCAAGCTGCTC AGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGGEST: gi|162277159|gb|FC453381.1|FC453381
genomic: GTGACCGATGCAACTTTGTTTGCTGCATTCTGTGTCTATCCAAGCTGCTCgtaagttgct ... tggtgaacagAGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGG
EST: GTGACCGATGCAACTTTGTTTGCTGCATTCTGTGTCTATCCAAGCTGCTC AGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGGEST: gi|162152881|gb|FC328975.1|FC328975
genomic: GTGACCGATGCAACTTTGTTTGCTGCATTCTGTGTCTATCCAAGCTGCTCgtaagttgct ... tggtgaacagAGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGG
EST: GTGACCGATGCAACTTTGTTTGCTGCATTTTGTGTCTATCCAAGCTGCTC AGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGGEST: gi|162261365|gb|FC437798.1|FC437798
genomic: GTGACCGATGCAACTTTGTTTGCTGCATTCTGTGTCTATCCAAGCTGCTCgtaagttgct ... tggtgaacagAGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGG
EST: GTGACCGATGCAACTTTGTTTGCTGCATTCTGTGTCTATCCAAGCTGCTC AGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGG
genomic: GTGACCGATGCAACTTTGTTTGCTGCATTCTGTGTCTATCCAAGCTGCTCgtaagttgct ... tggtgaacagAGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGG
tttttcagtgtgcgcgcactgctttttcttttttgaataattggttggtgaacagAGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGGCTTTGTTTCTTTCAGAAGTCAGCAG
tttttcttttttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagctagtgtggcgattgaacgtttttgtattaatattttacaatttttcagtgtgcgcgcactgctttttcttttttgaataattggttggtgaacagAGATGCACGAGTTATGTGGGATCAACGCTCAGGTCGTTCTAGAGGTTTCGGCTTTGTTTCTTTCAGAAGTCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT