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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggatcatatcatcaacagatgtcatcaccgatagcatttgaaactgaaagctgtttcaaactttagaaggcacctgtaatgtggaggcatataaccacacgataatccgtgatagagtgtacgttttgttgatttcagacgctttcagaacttctgcttctgaagatctctctgtggtcttggccaaaaatatagGAAGCGATCACCGCCAGGAGGAGGGTTGTGGAGGAAGAGGATAATTATACCGAAGCCTTGAAAAGTGCATACATCATGTTATTTCCTCCTGGGATCA

Basic information

species Physcomitrella patens
transcript PP1S84_287V6.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100414265|gb|BY992692.1|BY992692
EST:     GNAAAA-GGCACATGGTGGCAAGGTGCCAGCTAATGTGAGGTTGGTCAAG                         GAAGCGATCACCGCCAGGAGGAGGGTTGTGGA
genomic: GGAAAAAGGCACATGGTGGCAAGTTGCCAGCTAATGTGAGGTTGTTCAAGgtaatggatc ... aaaaatatagGAAGCGATCACCGCCAGGAGGAGGGTTGTGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttcagaacttctgcttctgaagatctctctgtggtcttggccaaaaatatagGAAGCGATCACCGCCAGGAGGAGGGTTGTGGAGGAAGAGGATAATTATACCGAAGCCTTGAAAAGTGCATACATCATGTTATTTCCTCCTGGGATCA
                                             aaaaatata  TA-rich tract