1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtctctcaacatacacactttcatccttccaaggcattggaaatttgcaatgaagagagtatttcactgcctgtggatgggtaaacaagatcatggctgtcgtatttcagttatattgcgaatagtggatgctacgaatgagacactggatcgtactgatgggacatgtattgatcgccagCACACCACAAAAGAATCCTTGGACCGACGACTGGATTACCTTCTTTCGCGACCATCGTCTTGGATTCCAATTACAGCTCATAAAGGATCAGTATGGCGAC
species | Physcomitrella patens |
transcript | PP1S83_158V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTCATCAGAGAAGGGCTTCGGGTTTGATGTAGACAACACCATTGGCAG CACACCACGAAAGAATCCTTGGACCGACGACTGGATTACCTTCTTTCGCGAEST: gi|18333323|gb|BJ165337.1|BJ165337
genomic: AGTTCATCAGAGAAGGGCTTCGGGTTTGATGTAGACAACACCATTGGCAGgtctctcaac ... tgatcgccagCACACCACAAAAGAATCCTTGGACCGACGACTGGATTACCTTCTTTCGCGA
EST: TGATGTAGACAACACCATTGGCAG CACACCACAAAAGAATCCTTGGACCGACGACTGGATTACCTTCTTTCGCGAEST: gi|208353856|gb|DC906544.1|DC906544
genomic: TGATGTAGACAACACCATTGGCAGgtctctcaac ... tgatcgccagCACACCACAAAAGAATCCTTGGACCGACGACTGGATTACCTTCTTTCGCGA
EST: AGTTCATCAGAGAAGGGCTTCGGGTTTGATGTAGACAACACCATTGGCAG CACACCACGAAAGAATCCTTGGACCGACGACTGGATTACCTTCTTTCGCGA
genomic: AGTTCATCAGAGAAGGGCTTCGGGTTTGATGTAGACAACACCATTGGCAGgtctctcaac ... tgatcgccagCACACCACAAAAGAATCCTTGGACCGACGACTGGATTACCTTCTTTCGCGA
ggatgctacgaatgagacactggatcgtactgatgggacatgtattgatcgccagCACACCACAAAAGAATCCTTGGACCGACGACTGGATTACCTTCTTTCGCGACCATCGTCTTGGATTCCAATTACAGCTCATAAAGGATCAGTATGGCGAC
atgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctcaacatacacactttcatccttccaaggcattggaaatttgcaatgaagagagtatttcactgcctgtggatgggtaaacaagatcatggctgtcgtatttcagttatattgcgaatagtggatgctacgaatgagacactggatcgtactgatgggacatgtattgatcgccagCACACCACAAAAGAATCCTTGGACCGACGACTGGATTACCTTCTTTCGCGACCATCGTCTTGGATTCCAATTACAGCTCATAAAGGATCAGTATGGCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA