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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacctcaaatataatggttatgcacccctcgttgtcaatgagtaagttacatggtagcagactttaaacactccttagtcgacgaaaatgtagatacttctacggatgtttctgcgtgatataatgatttgacttcttcatgaatacgcatcacgaaggatgataactttcggcaatgacagGGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAAGGACCTTGATAACGTTCGCCCATGTCTATTACATGGTGACCTCTGGAGCGGCAATGTTGCCAC

Basic information

species Physcomitrella patens
transcript PP1S83_158V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208396828|gb|DC920424.1|DC920424
EST:     ATTACAGCTCATAAAGGATCAGTATGGCGACAATGATCTNTACGTTAAAG                         GGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAAGGACCTTGATAACG
genomic: ATTACAGCTCATAAAGGATCAGTATGGCGACAATGATCTCTACGTTAAAGgtgagtacct ... gcaatgacagGGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAAGGACCTTGATAACG
EST: gi|18333323|gb|BJ165337.1|BJ165337
EST:     ATTACAGCTCATAAAGGATCAGTATGGCGACAATGATCTCTACGTTAAAG                         GGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAAGGACCTTGATAACG
genomic: ATTACAGCTCATAAAGGATCAGTATGGCGACAATGATCTCTACGTTAAAGgtgagtacct ... gcaatgacagGGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAAGGACCTTGATAACG
EST: gi|162187661|gb|FC364105.1|FC364105
EST:     ATTACAGCTCATAAAGGATCAGTATGGCGACAATGATCTCTACGTTAAAG                         GGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAAGGACCTTGATAACG
genomic: ATTACAGCTCATAAAGGATCAGTATGGCGACAATGATCTCTACGTTAAAGgtgagtacct ... gcaatgacagGGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAAGGACCTTGATAACG
EST: gi|208353856|gb|DC906544.1|DC906544
EST:     ATTACAGCTCATAAAGGATCAGTATGGCGACAATGATCTCTACGTTAAAG                         GGCANCGGCTTATGGAGANGCTGCCGACCTTGATGAA
genomic: ATTACAGCTCATAAAGGATCAGTATGGCGACAATGATCTCTACGTTAAAGgtgagtacct ... gcaatgacagGGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAA
EST: gi|37838919|gb|BJ596927.1|BJ596927
EST:     ATTACAGCTCATAAAGGATCAGTATGGCGACAATGATCTCTACGTTAAAG                         GGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAAGGACCTTGATAACG
genomic: ATTACAGCTCATAAAGGATCAGTATGGCGACAATGATCTCTACGTTAAAGgtgagtacct ... gcaatgacagGGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAAGGACCTTGATAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgacttcttcatgaatacgcatcacgaaggatgataactttcggcaatgacagGGCAGCGGCTTATGGAGAGGCTGCCGACCTTGATGAAGGACCTTGATAACGTTCGCCCATGTCTATTACATGGTGACCTCTGGAGCGGCAATGTTGCCAC
                                 tgataac  putative branch site (score: 2)
                                   ataacttt  TA-rich tract