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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattaccaactaatcagtttttcgtatacctactttttagcaagtctcttgttgcttattctaatcgttttatttatttgtttattttccatttgcagCTTGTGTTAGTCCAGCAGACTCTAATGCAGAAGAGAACTTGAACACTTTAAAATACGCAAATCGAGCGCGGAACATACAAAATAAGCCAATG

Basic information

species Physcomitrella patens
transcript PP1S80_21V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S80_21V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA04G10080.1 (Glycine max), 3'ss of exon 6
gtgattacca-actaatcagtttttcgtatacctactttttagcaagtctcttgttgcttattctaat-cgttttatttatttgtttattttccat-ttgcagCTTGTGTTAGTCCAGCAGACTCTAATGCAGAAGAGAACTTGAACACTTTAAAATACGCAAATCGAGCGCGGAACATACAAAATAAGCCAATG
   | |   |   ||   |     ||  ||    |   || ||  | | |  ||||   |||  | |   |  | || ||      | |     || ||||||| ||||||||||| || ||| | ||||| |||||||  |||||||||||||| || ||||| || || || ||||| || || ||| || | 
aaaactgtgatgataggtacaaactcaaatgatgagagttcagatatttttgtgttttctatagtcacatgcatcatcta---acctgtcagaaatgttgcagCATGTGTTAGTCCTGCTGACACAAATGCTGAAGAGACATTGAACACTTTAAAGTATGCAAACCGTGCTCGTAACATTCAGAACAAGGCAGTT

upper sequence: PP1S80_21V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv18s0001g07550.t01 (Vitis vinifera), 3'ss of exon 6
------------gtgattaccaactaatcagtttttcgtatacct------actttttagcaagtctcttgttgcttattctaatcgttttatttatttgtttattttc--------catttgcagCTTGTGTTAGTCCAGCAGACTCTAATGCAGAAGAGAACTTGAACACTTTAAAATACGCAAATCGAGCGCGGAACATACAAAATAAGCCAATG
             ||  | |    |  ||||  | |   | || |      |||  |||     |||  | ||| |   | | ||   | ||||| |   |   |||||        ||  | |||||||||||||||| || ||  | ||||||||||||| ||| |||||||| || || |||||||| || || || || || || ||| || | 
gtaagtacataaatgtcttcatcatgttcagcctgtataaaacattttggaactacttaaggcatcttatattgttctctttcatgactctatttttccttcctttttctaaatgtacaaatacagCTTGTGTTAGTCCTGCTGATACAAATGCAGAAGAGACCTTAAACACTTTGAAGTATGCAAATCGTGCTCGAAATATTCAGAACAAGGCAGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctcttgttgcttattctaatcgttttatttatttgtttattttccatttgcagCTTGTGTTAGTCCAGCAGACTCTAATGCAGAAGAGAACTTGAACACTTTAAAATACGCAAATCGAGCGCGGAACATACAAAATAAGCCAATG
               ttctaat  putative branch site (score: 2)
                                 tttgtttattttcc  putative PPT
            ttattctaatcgtttt  TA-rich tract