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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cccatcaaccgttgcggcgtcacaagacaccgtcaaagtctataatggggtgcggcgaatggatttttcatttctgaactgagtgttgttatttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGACTCCATACCCGTTAGACATGCGTGGTGAACTGGATGACACTGCTTTATT

Basic information

species Physcomitrella patens
transcript PP1S7_156V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100446463|gb|CJ970762.1|CJ970762
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCNTCAGTG                         AGTTGGACTNCACACTAT-GGNAATGAATCCATTCA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCA
EST: gi|162223608|gb|FC399420.1|FC399420
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|208362836|gb|DC950636.1|DC950636
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGGGTCTTCATTGTCTTCAGTG                         AGTTNGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|162270682|gb|FC446295.1|FC446295
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|208354657|gb|DC934301.1|DC934301
EST:     CCGACCCANGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAA-TGAATC
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATC
EST: gi|208360044|gb|DC934933.1|DC934933
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATNGGAA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAA
EST: gi|162274023|gb|FC450370.1|FC450370
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|100421795|gb|BY993647.1|BY993647
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAA
EST: gi|208384409|gb|DC928160.1|DC928160
EST:     CGACCCAAGATAGAGGAGTTCCTCAAGGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
genomic: CGACCCAAGATAGAGGAGTTCCTCAA-GGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|208363910|gb|DC939559.1|DC939559
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTNGGACTNCACACTAT
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTAT
EST: gi|208352142|gb|DC906273.1|DC906273
EST:     CCGACCCAAGATAGAGGANTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGANTCCAT
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCAT
EST: gi|100447685|gb|CJ971984.1|CJ971984
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTAT-GGAAATGAATCCAT
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCAT
EST: gi|208390935|gb|DC942239.1|DC942239
EST:     CCGACCCAAGATAGAGGAGTTCCTCA-GGGTGTCTNCATTGTCTNCAGTG                         AGT-GGACTTCACACTATTGGAAATGAATCN-TTCNCANT-GTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|208361725|gb|DC934965.1|DC934965
EST:     CCGACCCAAGATAGAGGAGT-CCTCANGG-TGTCTTCATTGTCTTCAGTG                         AGT-GGACTTCACACTAT
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTAT
EST: gi|162198094|gb|FC372121.1|FC372121
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|208346716|gb|DC913362.1|DC913362
EST:     CCGACCCAAGATAGAGGAGTTCCTCANGG-TGTCTTCATGGTCTNCAGTG                         AGTTGGANT-CTCACTATTGGAAATGA-TC-ATTCACA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACA
EST: gi|208379626|gb|DC927123.1|DC927123
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCTCACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|208391473|gb|DC937621.1|DC937621
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTNGGACTTCACACTATTGGAA-TGAATCCAT
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCAT
EST: gi|208372285|gb|DC936443.1|DC936443
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTNGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGG-A
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|208353244|gb|DC913918.1|DC913918
EST:     CCGACCCAAGATAGAGGAGTTCCTCA-GGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAA
EST: gi|208393881|gb|DC938464.1|DC938464
EST:     CCGACC-AAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTNCAGTG                         AGTTGGACTNCACACTATTGGAA-TGAATCC
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCC
EST: gi|100384726|gb|BY950716.1|BY950716
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|162203673|gb|FC378548.1|FC378548
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|208386794|gb|DC937186.1|DC937186
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATNCACA-TTGTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|208391423|gb|DC937571.1|DC937571
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGANTCCATTCACA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACA
EST: gi|208366691|gb|DC931348.1|DC931348
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATNCACA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACA
EST: gi|208379943|gb|DC927669.1|DC927669
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA
EST: gi|208355278|gb|DC929767.1|DC929767
EST:     CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATNGGAA-TGANTCCATNCACANT-GTTGATGG
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGG
EST: gi|100355867|gb|BY946078.1|BY946078
EST:     CCGAACCAAGATAGAGGAGTTCCTCAAGGGTGCCTTCATTGTCTTCAGTG                         AGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGGTGATGGAA
genomic: CCGACCCAAGATAGAGGAGTTCCTCAAGGGTGTCTTCATTGTCTTCAGTGgtaaacttta ... atttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggggtgcggcgaatggatttttcatttctgaactgagtgttgttatttgtgcagAGTTGGACTTCACACTATTGGAAATGAATCCATTCACAATTGTTGATGGGACTCCATACCCGTTAGACATGCGTGGTGAACTGGATGACACTGCTTTATT
                 atttttcattt  TA-rich tract