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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaaatatatttctggtcagttctagagtgcggcttctacgtgtaaattcattcttatatttgaagggtagctctgtttctgtcatcttaatataaatttacagtatttgctttttataactgtaatcaacccttcaagtttgttgggttttgaaataatttgtacgttggtttcactggcattcatagGTTCCTAGGTGGAATGAAGCCGATTCTGAGATGCTTCTTACTCGGGCTAATCCTTTCTTGCTACCCAAGCCATATCTTCTTGCTCAGCAGCACAGG

Basic information

species Physcomitrella patens
transcript PP1S79_20V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161486|gb|FC337653.1|FC337653
EST:     GATCTGAAGGAGCAACTCTACTCTCACCAGAGAAATTTATGACATTTTCG                         GTTCCTAGGTGGAATGAAGCCGATTCTGAGATGCTTCTTACTCGGGCTAAT
genomic: GATCTGAAGGAGCAACTCTACTCTCACCAGAGAAATTTATGACATTTTCGgtatgtaaat ... gcattcatagGTTCCTAGGTGGAATGAAGCCGATTCTGAGATGCTTCTTACTCGGGCTAAT
EST: gi|162173812|gb|FC349404.1|FC349404
EST:     GATCTGAAGGAGCAACTCTACTCTCACCAGAGAAATTTATGACATTTTCG                         GTTCCTAGGTGGAATGAAGCCGATTCTGAGATGCTTCTTACTCGGGCTAAT
genomic: GATCTGAAGGAGCAACTCTACTCTCACCAGAGAAATTTATGACATTTTCGgtatgtaaat ... gcattcatagGTTCCTAGGTGGAATGAAGCCGATTCTGAGATGCTTCTTACTCGGGCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaagtttgttgggttttgaaataatttgtacgttggtttcactggcattcatagGTTCCTAGGTGGAATGAAGCCGATTCTGAGATGCTTCTTACTCGGGCTAATCCTTTCTTGCTACCCAAGCCATATCTTCTTGCTCAGCAGCACAGG
              ttttgaaataatttgt  TA-rich tract