1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtcactcgagcagtttctgtcctgttgtatgtgaaatggcttttcctgctactttgaatgaagtttacatactaaagtcgaacttctgaatcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGCAGAGGCCCACTGTCAGCAAAGGCGACCTTATTATTCAAGAGAAATTCA
species | Physcomitrella patens |
transcript | PP1S76_197V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162192379|gb|FC369087.1|FC369087
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162268434|gb|FC444203.1|FC444203
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162189691|gb|FC366329.1|FC366329
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162181630|gb|FC357932.1|FC357932
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162176272|gb|FC352729.1|FC352729
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162268433|gb|FC444202.1|FC444202
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162196818|gb|FC373886.1|FC373886
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162229089|gb|FC404773.1|FC404773
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162243141|gb|FC416741.1|FC416741
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|37846864|gb|BJ604872.1|BJ604872
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|37853252|gb|BJ611260.1|BJ611260
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|37830846|gb|BJ588858.1|BJ588858
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162187241|gb|FC363191.1|FC363191
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|37850914|gb|BJ608922.1|BJ608922
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162149983|gb|FC326514.1|FC326514
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|37825618|gb|BJ583684.1|BJ583684
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|37824718|gb|BJ582784.1|BJ582784
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162269734|gb|FC445628.1|FC445628
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162169206|gb|FC345173.1|FC345173
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|37837980|gb|BJ595988.1|BJ595988
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|208350314|gb|DC925762.1|DC925762
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGEST: gi|162154849|gb|FC331891.1|FC331891
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
EST: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCAAAG ATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
genomic: CTAGGCAAACCACTATGACGGAGCTTGCCGCTGAAGGGCAGGCATCGAAGgtacgaattc ... tcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAG
ctgctactttgaatgaagtttacatactaaagtcgaacttctgaatcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGCAGAGGCCCACTGTCAGCAAAGGCGACCTTATTATTCAAGAGAAATTCA
tactaaa putative branch site (score: 7)
tttacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcactcgagcagtttctgtcctgttgtatgtgaaatggcttttcctgctactttgaatgaagtttacatactaaagtcgaacttctgaatcgagaacagATTTTACCACCTCCAATCACAAAATCAGATTTCGACAAAGTCCTCGCAAAGCAGAGGCCCACTGTCAGCAAAGGCGACCTTATTATTCAAGAGAAATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA