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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG

Basic information

species Physcomitrella patens
transcript PP1S74_168V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                   | ||  || |      |  |  |      || | |    | ||||  |  |    | || |  ||  |  | | |  | | | |  ||      |||| ||||| || || ||| | || ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
---------------------------------------------------------------------------------------------------gtaacatttt--tctatgatgtcctaaactgttctctcctgtgac--cattgatcttgaca-ataacatgtttagtca-tagcgccttg----cagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAATTCCCTCAAATTAAGGCTCATCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 8
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                                  ||| ||||  | |||  ||  || ||    ||   |       |   |||   ||| ||  ||  | | | ||| ||  ||||  | || || || || || ||||| |||   |||||||| || ||||| || |||||||| |||||||| ||||||||||||||||||||||||
------------------------------------------------------------------------------------------------------------------gta-ttgcatgatgttgtgcaagctacatttttttttttgcc-acgggtatttcttgtgt-taacttgatatta-tggcagGTTCTTGGTACTCCAACCCGTGAGGAAATACGATGCATGAACCCCAACTATACTGAGTTCAAATTTCCTCAGATTAAGGCTCATCCTTGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os05g04340.2 (Oryza sativa), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                                       |      | |  || |      ||  || ||    |     |||    ||  |   ||  ||  | ||  | | ||||  |||| || || ||||| |||||||| ||||||||||| || || ||||| ||||| || ||||| ||||| || ||||| || |||||||||
----------------------------------------------------------------------------------------------------------------------gtaaattatatcttgcttccatcgaaatcactccctttttgttgtttacctcctacttaactgactattc-tctcagGTTCTGGGTACCCCTACACGAGAGGAGATTAAGTGCATGAACCCAAATTACACCGAGTTTAAATTTCCGCAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os01g19150.4 (Oryza sativa), 3'ss of exon 8
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagt-tatgacttcgctagaatggatatgtaggacttatgggtagttgg--gtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                        ||   | ||| |  | | |  |||  || ||| | ||||   |  |     |   | | |||  | |   ||    |    ||  |    | ||||  |||| || || ||| | || || || ||    ||||||||||||||||| ||||| ||||| || ||||| || ||||| || |||||||||
--------------------------------------------------------------------------------------------------------gtaacatctgat-ttagtttagtggaatattattctatgtagtttcccccttttcttt-tagctcatgcaggagacttactgtacttcattcagGTACTGGGTACTCCAACAAGGGAAGAAATCAAACATATGAATCCGAACTACACTGAGTTTAAGTTCCCCCAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os01g14860.1 (Oryza sativa), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                |||  |  |      |||||  ||  | ||  |  ||  |||| |    |||   |    ||  | |   || |      |  ||       ||   ||||  | || ||||| ||| | ||||| || || ||||||||||| ||||| || |||||||||||||| || ||||| || || || |||||||||
------------------------------------------------------------------------------------------------gtt--agtgccaattctggtgtttagttggcct--tgcgagttgt----tcggaggtgcagaagtttgtaacattaa---aactgatcacacatcgcagGTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os02g14130.1 (Oryza sativa), 3'ss of exon 8
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                         ||  |  |||      |  |     |||| |||  ||| | | |  | || |      | |    |   |   ||      |||  |  |      ||  || |||||  | || || || ||||| ||||| ||    ||||||||||| |||||||| || ||||  |||||||| ||||| ||||| || |||||||||
-----------------------------------------------------------------------------------------gtagtatgttaggcactgctctacagtacatgc--ggtctaaagaaaatt-tcttaatgtttttctattttcataaactgaatgaattttct----ttgttggtagGTTCTTGGTACTCCAACACGTGAGGAAATCCGCTGCATGAATCCCAACTACACAGAATTCAGATTTCCTCAGATTAAAGCTCACCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G138676_T02 (Zea mays), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggt-acttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                         ||| |    | |  |  |  |  ||   |  |      |||  || |   |     | | | |  |   ||   |  | | ||   | |  ||  | ||      |||| ||||| || || ||| | || ||||| ||||||||||| || ||||| |||||||||||||| || |||||||| |||||||| |||||||||
-----------------------------------------------------------------------------------------gtgattttcttacggtatccatatgaccatatctctactgttttgctgccttcttttgcaccatgacatat---tgaggcata---gcatctgcatcttg----cagGTTTTGGGTACTCCAACAAGGGAAGAGATCAAGTGCATGAACCCAAACTATACGGAGTTCAAGTTCCCACAAATTAAAGCTCATCCGTGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G045330_T02 (Zea mays), 3'ss of exon 8
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                                  ||| ||||    |||  |   | |    | |    |    ||          |||||| ||||  ||  | |   ||| ||||  | || || || || || |||||||||  |||||||||||| ||||| || ||||||| ||||||||| || ||||||||||| |||||||||
------------------------------------------------------------------------------------------------------------------gta-ttgcaaaatgt--tccaaatagaaattctattcctctgccgcgacgttacttattggtatgtga-tatgcctgt-agGTTCTTGGTACTCCAACCCGTGAGGAGATACGGTGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G472625_T01 (Zea mays), 3'ss of exon 8
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                           ||| |||  |  || ||      |       |||   |   |  |  ||  |        ||||||| ||  ||  |||   ||| ||||  | || || || || || |||||||||   ||||||||||| ||||| || ||||||| ||||||||| || ||||||||||| |||||||||
-----------------------------------------------------------------------------------------------------------gta-ctgcaaaatgttccaaagtagacattctattcttctaccggggtgttt--------cttatggttatgtga-tgtgcctgt-agGTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G472625_T02 (Zea mays), 3'ss of exon 8
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG----
                                                                                                           ||| |||  |  || ||      |       |||   |   |  |  ||  |        ||||||| ||  ||  |||   ||| ||||  | || || || || || |||||||||   ||||||||||| ||||| || ||||||| ||||||||| || ||||||||||| |||||||||    
-----------------------------------------------------------------------------------------------------------gta-ctgcaaaatgttccaaagtagacattctattcttctaccggggtgttt--------cttatggttatgtga-tgtgcctgt-agGTTCTTGGTACTCCAACCCGTGAGGAGATACGATGCATGAATCCCAACTATACTGAGTTCAGGTTTCCTCAGATAAAGGCTCATCCGTGGCACAAGGTAT

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA03G38850.2 (Glycine max), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                             |||||||    ||  |  |     ||  |  | | | |  |||| | |     |||| |||       ||  ||   || | |      |||| | | |  ||||          |||||  |||| || || ||| | || |||||||||||||||||||| ||||||||||| || || || || || ||||| || ||||| |||||||||
----------------------------------------------------------------------------tgtttgaatcactgattctctgatcaatttgatggatag-gcttggttgtcacaatgtcagta------tctttaacgtgtaaactgtccacttgttgct--ttgg----------tagGTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA07G08320.1 (Glycine max), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagtta-tgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                      || |   | ||| |  ||  || || |  | ||||   |||  |||     || |     |   || |   ||    |  |   || | | |||   |   ||    | ||    |||||  || ||      ||    ||||| ||||| ||||||||  | || || |||| |||||||||||| |||||||  || || ||||||||||| ||||| ||||| || |||||||||
------------------------------------------------------gtacattttttttgtgttcttctgtat--actgttcccttgttttgct---ttatgatcagactttccaaagttgtgttctgtctacttatttcttcaatctgagctttta----ttatg--tactt-----cta----tagGTCTTGGGAACACCCACCAGAGAAGAAATAAGGTGCATGAATCCAAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCTCACCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA10G01280.1 (Glycine max), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtg-ttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                        |||| |||| ||      |  || || |  |||| | |  |  || ||  | ||   | |  |   ||   |   ||   || | | |    || |  | |   | |||| || || || || ||| | || || || |||||||||||||| || || || |||| ||| ||||| |||||||| ||||| || |||||||||
----------------------------------------------------------------------------------------tgtgattgcattttc---tcttaactag--cttgtttgtag--atattcataatagttcccttgttatcttttcatacttctgaagag-gtctgtgattcacattcagGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                           |||  |    ||    |   ||| |  |  | ||  ||   ||| | |  || |    |  |  |    |  ||    |   |   || |  | ||||| || ||| | || || |||  ||| ||||||||||| ||||| |||||||||||||||||||| || ||||| || |||||||||
-----------------------------------------------------------------------------------------------------------gtacttaac-ctgatccctcgtgttcct--tcatctctcttctatatttaatttactagtttact---catctgtacatc--taccagATTCTTGGGACGCCTACAAGAGAAGAAATACGGTGTATGAATCCGAATTACACAGAGTTCAAGTTTCCTCAAATCAAAGCTCACCCGTGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT1G57870.1 (Arabidopsis thaliana), 3'ss of exon 10
gtagcttacata-tggtagatgttgaggaagtgcaggggtctac--agcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgc-gttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
||||  |   |  |   |  | ||   |   |    |  | |||  || | ||| |     | | | |  ||   || |   |   | | |     ||| | | | |  || |   |   ||||   |    |  |  |||| | ||||          | | ||       | |||| |  ||   ||| | ||  |||| ||||| ||||| ||| | |||||||| || ||||||||||| |||||||| || || || |||||||| || ||  |||||||||||||||||
gtagtatttttgctatcaattcttttagggttagttgtatttacaaagaaaatgacatctttagagct--ggcactgactaat---agtttctcactgctgattatattttttttataaaactttaccaccatttttgtagt-aggactc---------gtacattctctcttcatggttttttaattgtca-tgc-agGTTTTGGGTACACCAACAAGGGAGGAGATCAAATGCATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgtta-atgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                         || |    |  |  || | |  ||| || |  ||   | |  | ||| |  |        |||    | || | ||||       || ||||  |||||  | |||| |  |||| ||||||||  | || || || |||||||||||||| || ||||  |||||||||||||| ||||| || ||||| || |||||||||
-----------------------------------------------------------------------------------------gtttgctatcaagtggctttt-ctgttattcactttcttt--tcttaatatta-------taggtcagctaagcaggat------gttgttgcatgttatgtcttagATTCTGGGTACACCCACCAGAGAAGAAATTAAGTGCATGAATCCAAATTACAATGAGTTCAAGTTTCCACAAATCAAAGCTCACCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 3'ss of exon 8
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                    ||| |   |    ||  |   || |   ||  |   ||||       ||| | |||  ||        |         || || |     ||  ||   |     ||  |||| ||||| ||||| ||  | ||||||||||| || |||||||| |||||||| || || || || || ||||| ||| ||||||| |||||||||
------------------------------------------------------------------------------------atgctacttctatttacagaatttt---tgaaa---gctcaaatc--tgtcattta-aacccaaaggaagcctcagaataagattc-catgtgtttaaattgctgtgc-agGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACACCGAATTTAAATTCCCACAAATAAAGCCTCATCCATGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                                        |  ||     ||  | | | |   ||  ||    |   |  |     ||  ||   |      || |  ||  |||| || || || || || |||||||| || || ||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||| |||||||||
------------------------------------------------------------------------------------------------------------------------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaag-acttgcttttgc-agGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 9
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgtt--agGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                                             ||  |     | |  ||   ||  |    |   | | |  || |      |  |   |  ||  | ||  |||| || || || || || || ||||| || || ||||||||||| |||||||||||||| ||||| ||||| ||||| || ||||| |||||||||
-----------------------------------------------------------------------------------------------------------------------------gtacgcatgcattcttgctctcttt----tttctttttgcgagtcgctcttgctcaagacttgcttttgcagGTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ04915 (Selaginella moellendorffii), 3'ss of exon 8
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                                               ||   | | ||| |   | |  ||   ||| |  |     || ||    ||||||   |       ||||  | || || || || ||||||||||| ||||| |||||||| ||||||||||| |||||||| |||||||| ||||| || ||||||||||||
-------------------------------------------------------------------------------------------------------------------------------gttg-gctcgttgtttttgccttatggtggctgggcg---ctcataa--agttggacttgggc---agGTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCACCCTTGGCACAAG

upper sequence: PP1S74_168V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: EFJ10962 (Selaginella moellendorffii), 3'ss of exon 8
gtagcttacatatggtagatgttgaggaagtgcaggggtctacagcagatgtcggtgctggtgtttgggttttgtccgtttgaaatgttgtgttgcgttgaaaggttgtagctggtacttgctcggtgtgatgttagttatgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                                                                                                               ||   | | ||| |   | |  ||   ||| |  |     || ||    ||||||   |       ||||  | || || || || ||||||||||| ||||| |||||||| ||||||||||| |||||||| |||||||| ||||| |||||||||||||||
-------------------------------------------------------------------------------------------------------------------------------gttg-gctcgttgtttttgccttatggtggctgggcg---ctcataa--agttggacttgcgc---agGTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCATCCTTGGCACAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 27 (downstream exon)
Score: 9

CCTTTGTTCCCTGGAGAAAGTGGAGTCGATCAATTGGTGGAAATCATCAAGgtagcttaca ... ttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacttcgctagaatggatatgtaggacttatgggtagttgggtgttaatgttagGTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAG
                                           tgttaat  putative branch site (score: 9)
                                             ttaatgtta  TA-rich tract