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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaactattatatgtttagttgctgtgtgatttatggaagagattggaaacttttttaaatatctgaccttgtttgttaataatcacattttgtttgcagACTTAAGGCGAGCCAGAGAGGAGTGCTGCTCGGATTTTCGTAGGCTTAATTCTACCGGTGAATCTACAAATAGTCATGGTACTGTGCAAAAATTGCATTC

Basic information

species Physcomitrella patens
transcript PP1S73_26V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37825352|gb|BJ583418.1|BJ583418
EST:     ATCTGCGGCTGTTACGGCTTCGGCTGCTCAGTAACTAAGTCAGCTTAACG                         ACTTAAGGCGAGCCAGAGAGGAGTGCTGCTCGGATTTTCGTAGGCTTAATT
genomic: ATCTGCGGCTGTTACGGCTTCGGCTGCTCAGTAACTAAGTCAGCTTAACGgtaaactatg ... ttgtttgcagACTTAAGGCGAGCCAGAGAGGAGTGCTGCTCGGATTTTCGTAGGCTTAATT
EST: gi|37848477|gb|BJ606485.1|BJ606485
EST:     ATCTGCGGCTGTTACGGCTTCGGCTGCTCAGTAACTAAGTCAGCTTAACG                         ACTTAAGGCGAGCCAGAGAGGAGTGCTGCTCGGATTTTCGTAGGCTTAATT
genomic: ATCTGCGGCTGTTACGGCTTCGGCTGCTCAGTAACTAAGTCAGCTTAACGgtaaactatg ... ttgtttgcagACTTAAGGCGAGCCAGAGAGGAGTGCTGCTCGGATTTTCGTAGGCTTAATT
EST: gi|37849577|gb|BJ607585.1|BJ607585
EST:     ATCTGCGGCTGTTACGGCTTCGGCTGCTCAGTAACTAAGTCAGCTTAACG                         ACTTAAGGCGAGCCAGAGAGGAGTGCTGCTCGGATTTTCGTAGGCTTAATT
genomic: ATCTGCGGCTGTTACGGCTTCGGCTGCTCAGTAACTAAGTCAGCTTAACGgtaaactatg ... ttgtttgcagACTTAAGGCGAGCCAGAGAGGAGTGCTGCTCGGATTTTCGTAGGCTTAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaacttttttaaatatctgaccttgtttgttaataatcacattttgtttgcagACTTAAGGCGAGCCAGAGAGGAGTGCTGCTCGGATTTTCGTAGGCTTAATTCTACCGGTGAATCTACAAATAGTCATGGTACTGTGCAAAAATTGCATTC
                             tgttaat  putative branch site (score: 3)
                                           ttttgttt  putative PPT
      ttttttaaatatctga  TA-rich tract