Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctattaatgaactcatgatttgagttatggttgtggcacaatttaatgatttgcactcattcttttcgcaaatgattggtgtctcatcttatgttcatgtggtggttctgttgagtgcaacagGTTTTTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAATACAACGATGAGAACCAAGTAACATTTGTGACTATGAACAAGGT

Basic information

species Physcomitrella patens
transcript PP1S71_218V6.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S71_218V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: LOC_Os06g37440.1 (Oryza sativa), 3'ss of exon 7
gtaagtttctattaatgaactcatgatttgagttatggttgtggcacaatttaatgatttgcactcattcttttcgcaaatgattggtgtctcatcttatgttcatgtggtggt-tctgttgagtgcaacagGTTTTTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAATACAACGATGAGAACCAAGTAACATTTGTGACTATGAACAAGGT
                          ||   ||||   || | |||  || |   |   || ||| | | | |||   | |   | || | | |  | |     |  |  |    ||| ||        ||||||| ||||| ||||  ||  | |||||||  ||  ||||||||||||| ||||| |||||||||||||||   ||| | |||||||| |||||||||||
-------------------------cttcttgttacaattttagcaatatatttaggcatgaacttaatttattcc--attttcttgtttttgaattaacagagacattatcacgtctatt-----tttcagGTTTCTGGGACATGTATGACCCAGAGGGTTACTCTCTGTGGTTCTGTGACTACAAGTACAACGATGAGAACACCGTATCGTTTGTGACGATGAACAAGGT

upper sequence: PP1S71_218V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G134582_T01 (Zea mays), 3'ss of exon 7
gtaagtttctattaatgaactcatgatttgagttatggttgtggcacaatttaatgatttgcactcattcttttcgcaaatgattggtgtctcatcttatgttcatgtggtggttctgttgagtgcaacagGTTTTTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAATACAACGATGAGAACCAAGTAACATTTGTGACTATGAACAAGGT
                          ||||   |||  || |||     || |    ||   |    ||  | |  ||   |     |||   | |  |      ||   |    || |   ||     |||||| ||||| |||| |||  | ||||| |  ||  ||||||||||||| ||||| ||||| |||||||||  |||  | |||||||| |||||||||||
-------------------------gtttggtatatctttttggtgtt-ttaagcagttcctaagttttgatctgtcagtagtgcaatgtacgaaccaac-----tgaactcaaactctcatgtattttagGTTTCTGGGATATGTACGACCCAGAGGGCTACTCCCTGTGGTTCTGTGACTACAAGTACAATGATGAGAACACAGTGTCGTTTGTGACCATGAACAAGGT

upper sequence: PP1S71_218V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GRMZM2G029559_T02 (Zea mays), 3'ss of exon 7
gtaagtttctattaatgaactcatgatttgagttatggttgtggcacaatttaatgatttgcactcattcttttcgcaa-atgattggtgtctcatcttatgttcatgtggtggttctgttgagtgcaacagGTTTTTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAATACAACGATGAGAACCAAGTAACATTTGTGACTATGAACAAGGT
                         |||| |        |   ||     | || | ||||   |   ||| || | |     ||       ||| || |   |||  |      | | ||        ||||||| ||||| ||||  ||  | ||||| |  ||  ||||||||||||| ||||| ||||| || ||||||  |||  | ||||||||||||||||||||
-----------------------gcatttaaacaccccattaagcggttctcaaagttttgtttttgatctgttagtagtgctatgcacaagtcaactga-actcaactcccatgtatttt--------cagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCCCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACAGTGTCGTTTGTGACTATGAACAAGGT

upper sequence: PP1S71_218V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA16G00360.1 (Glycine max), 3'ss of exon 6
gtaagtttctattaatgaactcatgatttgagttatggttgtggcacaatttaatgat--ttgcactcattcttttcgcaaatgattggtgtctcatcttatgttcatgtggtggttctgttgagtgcaacagGTTTTTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAATACAACGATGAGAACCAAGTAACATTTGTGACTATGAACAAGGT
                                        ||   || |||  || ||  | ||| | ||   | |    | |||   |    |||| |||  | | |       |||  || | |    |||| |||||||| |||| |||| | ||||| |  ||  ||||||||||||||||||||||||| |||||||||  |||  | ||||| ||  | ||||||||
----------------------------------------gtataactattctattatgatggcaatgatggatatgatga-tgagatgcacatcatttta-atcctt-------ttccttttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACACAGTTTCCTTTGTTACGTTAAACAAGGT

upper sequence: PP1S71_218V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: GLYMA12G28670.1 (Glycine max), 3'ss of exon 6
gtaagtttctattaatgaactcatgatttgagttatggttgtggcacaatttaatgatttgcactcattcttttcgcaaatgattggtgtctcatcttatgttcatgtggtggttctgttg-agtgcaacagGTTTTTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAATACAACGATGAGAACCAAGTAACATTTGTGACTATGAACAAGGT
                                                 | ||   |||    || ||| |  | |||   |||  | |   ||| | || || ||       ||   ||  | |    |||| |||||||| |||| |||| | ||||| |  ||  ||||||||||||||||||||||||| |||||||||  |||  | ||||| ||  | ||||||||
------------------------------------------------gtatagctattcattct-attatgatggcatg-gatatgagatgcatgtcattttaatcctccttttaaattttaattttgcagGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACTCAGTTTCCTTTGTTACATTAAACAAGGT

upper sequence: PP1S71_218V6.1 (Physcomitrella patens), 3'ss of exon 7
lower sequence: AT1G09640.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtttctattaatgaactcatgatttgagttat--ggttgtggcacaatttaatgatttgcactcattcttttcgcaaatgattggtgtctcatcttatgttcatgtggtggttctgttgagtgcaacagGTTTTTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAATACAACGATGAGAACCAAGTAACATTTGTGACTATGAACAAGGT
    || | |  | ||    || |      |||| |   | | ||  |  |   ||| ||||  |   |||         ||| | | || | | ||| | |  | || | |||| ||   ||       |||| || ||||| ||||  ||  | ||||| |  ||| | ||||||||||| ||||| |||||||||||||||   ||  ||||||| ||  | ||||||||
----gtgtgtggtgatatcttcctctacctagtttttcagctttgctatcagggaattattt--agctattg-------gaatcaattgttttttatcatgt-ctaatattgtggctcaaatg-------cagGATTCTGGGACATGTATGACCCAGAGGGATACTCACTATGGTTCTGTGACTACAAGTACAACGATGAGAACATGGTGTCATTTGTCACGCTCAACAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaatgattggtgtctcatcttatgttcatgtggtggttctgttgagtgcaacagGTTTTTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAATACAACGATGAGAACCAAGTAACATTTGTGACTATGAACAAGGT
                 atcttat  TA-rich tract