1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttatttatgtttctttaaagccattgtcttactcctagtgtaatttggttagttgaggccttgcaattttttactttgctgcgttagtaggaatcaaattttcattaagctcactcgacaagatttcgggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGGGTTTGCTG
species | Physcomitrella patens |
transcript | PP1S71_187V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAG ATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGEST: gi|67694755|gb|BJ954988.1|BJ954988
genomic: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAGgttatttatg ... ggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
EST: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAG ATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGEST: gi|67575491|gb|BJ948315.1|BJ948315
genomic: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAGgttatttatg ... ggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
EST: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAG ATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGEST: gi|162219672|gb|FC395876.1|FC395876
genomic: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAGgttatttatg ... ggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
EST: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAG ATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGEST: gi|67698963|gb|BJ959196.1|BJ959196
genomic: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAGgttatttatg ... ggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
EST: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAG ATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGEST: gi|15590673|gb|BI675289.1|BI675289
genomic: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAGgttatttatg ... ggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
EST: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAG ATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGEST: gi|208381504|gb|DC919506.1|DC919506
genomic: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAGgttatttatg ... ggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
EST: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAG ATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGEST: gi|162202798|gb|FC379780.1|FC379780
genomic: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAGgttatttatg ... ggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
EST: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAG ATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGEST: gi|16137490|gb|BI894354.1|BI894354
genomic: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAGgttatttatg ... ggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
EST: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAG ATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGEST: gi|18339257|gb|BJ171284.1|BJ171284
genomic: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAGgttatttatg ... ggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
EST: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAG ATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
genomic: GGTTCATTCCTGGCATTCTTGACGTGGAGATCCTTGACGAAATTATCCAGgttatttatg ... ggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAG
ttagtaggaatcaaattttcattaagctcactcgacaagatttcgggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGGGTTTGCTG
agctcac putative branch site (score: 4)
aatcaaattttcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttatgtttctttaaagccattgtcttactcctagtgtaatttggttagttgaggccttgcaattttttactttgctgcgttagtaggaatcaaattttcattaagctcactcgacaagatttcgggttctacagATTTCCAGCAATGATGCTGTGGAAATGGCTAAGCAACTTGCTTTGAAGGAGGGTTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG