1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acctcatgtgtcgggtatatcttttgcaattcgcaactttggagtatttgtatgagttcgcttttgtagcagtttattaaaatgggttctgcaatttcagTTATAGCCGACATAGAAGGTATCCCGAAAGAAAAATGGACAGTGTACTCAGAGGCGGACAAGGAGGTTCTTGCAGTTTATCTTAATCAGAAAAAGAATGG
species | Physcomitrella patens |
transcript | PP1S6_410V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTCTGGAAACTGAAGGGAGGAAACGATCGTACAGACGTAACCCTTCAAG TTATAGCCGACATAGAAGGTATCCCGAAAGAAAAATGGACAGTGTACTCAGEST: gi|37842355|gb|BJ600363.1|BJ600363
genomic: AGTCTGGAAACTGAAGGGAGGAAACGATCGTACAGACGTAACCCTTCAAGgtaagttggt ... gcaatttcagTTATAGCCGACATAGAAGGTATCCCGAAAGAAAAATGGACAGTGTACTCAG
EST: AGTCTGGAAACTGGAGGGAGGAAACGATCGTACAGACGTAACCCTTCAAG TTATAGCCGACATAGAAGGTATCCCGAAAGAAAAATGGACAGTGTACTCAG
genomic: AGTCTGGAAACTGAAGGGAGGAAACGATCGTACAGACGTAACCCTTCAAGgtaagttggt ... gcaatttcagTTATAGCCGACATAGAAGGTATCCCGAAAGAAAAATGGACAGTGTACTCAG
atttgtatgagttcgcttttgtagcagtttattaaaatgggttctgcaatttcagTTATAGCCGACATAGAAGGTATCCCGAAAGAAAAATGGACAGTGTACTCAGAGGCGGACAAGGAGGTTCTTGCAGTTTATCTTAATCAGAAAAAGAATGG
agtttattaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctcatgtgtcgggtatatcttttgcaattcgcaactttggagtatttgtatgagttcgcttttgtagcagtttattaaaatgggttctgcaatttcagTTATAGCCGACATAGAAGGTATCCCGAAAGAAAAATGGACAGTGTACTCAGAGGCGGACAAGGAGGTTCTTGCAGTTTATCTTAATCAGAAAAAGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA