1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgagtcgctgctccatgtgtagacttttagtttcgaaagacgggtttcatggttttattttgcaccattttttaaactcaaggtctcgtattgtttgcagGCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAATGAAGAGGCCTGCTTTGAGAATTTTGGATTAAAAGACAGGAGCAGGCTA
species | Physcomitrella patens |
transcript | PP1S6_282V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCAGTGACTTCGATTCCCAAGGAGGCATTATACAAATGAACATTAACAG GCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAAEST: gi|162196369|gb|FC374373.1|FC374373
genomic: TCCAGTGACTTCGATTCCCAAGGAGGCATTATACAAATGAACATTAACAGgtggtttatc ... ttgtttgcagGCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAA
EST: TCCAGTGACTTCGATTCCCAAGGAGGCATTATACAAATGAACATTAACAG GCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAAEST: gi|162203929|gb|FC380221.1|FC380221
genomic: TCCAGTGACTTCGATTCCCAAGGAGGCATTATACAAATGAACATTAACAGgtggtttatc ... ttgtttgcagGCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAA
EST: GCATTATACAAATGAACATTAACAG GCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAAEST: gi|162190594|gb|FC366232.1|FC366232
genomic: GCATTATACAAATGAACATTAACAGgtggtttatc ... ttgtttgcagGCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAA
EST: TCCAGTGACTTCGATTCCCAAGGAGGCATTATACAAATGAACATTAACAG GCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAAEST: gi|162197961|gb|FC373677.1|FC373677
genomic: TCCAGTGACTTCGATTCCCAAGGAGGCATTATACAAATGAACATTAACAGgtggtttatc ... ttgtttgcagGCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAA
EST: ATTATACAAATGAACATTAACAG GCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAAEST: gi|162197962|gb|FC373678.1|FC373678
genomic: ATTATACAAATGAACATTAACAGgtggtttatc ... ttgtttgcagGCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAA
EST: TCCAGTGACTTCGATTCCCAAGGAGGCATTATACAAATGAACATTAACAG GCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAA
genomic: TCCAGTGACTTCGATTCCCAAGGAGGCATTATACAAATGAACATTAACAGgtggtttatc ... ttgtttgcagGCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAA
ttcatggttttattttgcaccattttttaaactcaaggtctcgtattgtttgcagGCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAATGAAGAGGCCTGCTTTGAGAATTTTGGATTAAAAGACAGGAGCAGGCTA
attttttaaactcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtcgctgctccatgtgtagacttttagtttcgaaagacgggtttcatggttttattttgcaccattttttaaactcaaggtctcgtattgtttgcagGCCGTGGAATGACGGGTGATGCAGGTATAAATTTGTCATGGGATTAGCGAATGAAGAGGCCTGCTTTGAGAATTTTGGATTAAAAGACAGGAGCAGGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - tgctcca