1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctgattgcttttgcttgaatagatctcgaatagctggtgaatgcggacaagttggtgcaacctttgtatcaaagtgaaatggtaacttggtggttctcagGAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGATGAAACAAAGCTGAAGAGTGTTGAGCTCTGGGATGGCAAATGGGGCTGT
species | Physcomitrella patens |
transcript | PP1S69_37V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAACATCACCAGCAGGCTCCCAATATGAGTGGGGTCCCACCTCATTGATG GAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGAEST: gi|162191380|gb|FC368163.1|FC368163
genomic: CAACATCACCAGCAGGCTCCCAATATGAGTGGGGTCCCACCTCATTGATGgtgagagagt ... tggttctcagGAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGA
EST: CAACATCACCAGCAGGCTCCCAATATGAGTGGGGTCCCACCTCATTGATG GAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGAEST: gi|162190735|gb|FC366997.1|FC366997
genomic: CAACATCACCAGCAGGCTCCCAATATGAGTGGGGTCCCACCTCATTGATGgtgagagagt ... tggttctcagGAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGA
EST: CAACATCACCAGCAGGCTCCCAATATGAGTGGGGTCCCACCTCATTGATG GAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGAEST: gi|7286537|gb|AW599024.1|AW599024
genomic: CAACATCACCAGCAGGCTCCCAATATGAGTGGGGTCCCACCTCATTGATGgtgagagagt ... tggttctcagGAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGA
EST: GTGGGGTCCCACCTCATTGATG GAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGAEST: gi|162198483|gb|FC375318.1|FC375318
genomic: GTGGGGTCCCACCTCATTGATGgtgagagagt ... tggttctcagGAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGA
EST: CAACATCACCAGCAGGCTCCCAATATGAGTGGGGTCCCACCTCATTGATG GAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGA
genomic: CAACATCACCAGCAGGCTCCCAATATGAGTGGGGTCCCACCTCATTGATGgtgagagagt ... tggttctcagGAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGA
gacaagttggtgcaacctttgtatcaaagtgaaatggtaacttggtggttctcagGAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGATGAAACAAAGCTGAAGAGTGTTGAGCTCTGGGATGGCAAATGGGGCTGT
tggtaac putative branch site (score: 2)
ttctc putative PPT
tttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgattgcttttgcttgaatagatctcgaatagctggtgaatgcggacaagttggtgcaacctttgtatcaaagtgaaatggtaacttggtggttctcagGAAATTGAGATAAGGAGTCGGACAGATGTTTAACCCTTCTGCACAATCGGATGAAACAAAGCTGAAGAGTGTTGAGCTCTGGGATGGCAAATGGGGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - tggtgca