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...gattccgtcgctgtactgagatgaccatgtgattggagaactgtcacaagtattcttgcaccaactcagagactaaagtttcgtgcttgttaaattgcagTTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCAGAAGAAATTCCGTGCATCTCCGCTCTAGTTGTCGCTCTTCTTTCTAAG
species | Physcomitrella patens |
transcript | PP1S62_94V6.7 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAG TTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCAEST: gi|162251336|gb|FC427978.1|FC427978
genomic: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAGgttgctcaac ... taaattgcagTTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCA
EST: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAG TTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCAEST: gi|162150866|gb|FC327346.1|FC327346
genomic: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAGgttgctcaac ... taaattgcagTTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCA
EST: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAG TTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCAEST: gi|100367410|gb|BY984691.1|BY984691
genomic: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAGgttgctcaac ... taaattgcagTTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCA
EST: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAG TTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCAEST: gi|162179908|gb|FC355979.1|FC355979
genomic: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAGgttgctcaac ... taaattgcagTTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCA
EST: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAG TTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCAEST: gi|162268968|gb|FC445460.1|FC445460
genomic: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAGgttgctcaac ... taaattgcagTTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCA
EST: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAG TTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCA
genomic: GTGATATCGTACTCAACATTGGTTTCATGGGCTCCAAATTGCCCGTTCAGgttgctcaac ... taaattgcagTTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCA
acaagtattcttgcaccaactcagagactaaagtttcgtgcttgttaaattgcagTTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCAGAAGAAATTCCGTGCATCTCCGCTCTAGTTGTCGCTCTTCTTTCTAAG
gactaaa putative branch site (score: 2)
ttgttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattccgtcgctgtactgagatgaccatgtgattggagaactgtcacaagtattcttgcaccaactcagagactaaagtttcgtgcttgttaaattgcagTTAAAAAACCTGTCCTTCTTCGCAACTATTCGTGTCATCTTTCAACTATCAGAAGAAATTCCGTGCATCTCCGCTCTAGTTGTCGCTCTTCTTTCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA