1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaaatatgtttttgcatgatttcaaaagcggcaaaacttttataggctaggtttctggtgcttcagattggatattaatcctcgtgttcaccccgatcagGGCCGGGAGGTGTTGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGTGAAGATTTACGGTTATGGTTGCAATACAGGCGAAGTGCAGATGCTGCAA
species | Physcomitrella patens |
transcript | PP1S62_239V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGTANATGATGAGCTGTCTACATCGATGGGTGAAACTTGTGAAAATGAG GGCCGGGAGGTGTNGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGTEST: gi|162211735|gb|FC387399.1|FC387399
genomic: CTGTAGATGATGAGCTGTCTACATCGATGGGTGAAACTTGTGAAAATGAGgtcagtccta ... ccccgatcagGGCCGGGAGGTGTTGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGT
EST: CTGTAGATGATGAGCTGTCTACATCGATGGGTGAAACTTGTGAAAATGAG GGCCGGGAGGTGTTGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGTEST: gi|162272699|gb|FC448325.1|FC448325
genomic: CTGTAGATGATGAGCTGTCTACATCGATGGGTGAAACTTGTGAAAATGAGgtcagtccta ... ccccgatcagGGCCGGGAGGTGTTGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGT
EST: ATGATGAGCTGTCTACATCGATGGGTGAAACTTGTGAAAATGAG GGCCGGGAGGTGTTGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGTEST: gi|162169515|gb|FC346079.1|FC346079
genomic: ATGATGAGCTGTCTACATCGATGGGTGAAACTTGTGAAAATGAGgtcagtccta ... ccccgatcagGGCCGGGAGGTGTTGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGT
EST: CTGTAGATGATGAGCTGTCTACATCGATGGGTGAAACTTGTGAAAATGAG GGCCGGGAGGTGTTGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGT
genomic: CTGTAGATGATGAGCTGTCTACATCGATGGGTGAAACTTGTGAAAATGAGgtcagtccta ... ccccgatcagGGCCGGGAGGTGTTGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGT
gctaggtttctggtgcttcagattggatattaatcctcgtgttcaccccgatcagGGCCGGGAGGTGTTGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGTGAAGATTTACGGTTATGGTTGCAATACAGGCGAAGTGCAGATGCTGCAA
tattaat putative branch site (score: 4)
ttcacccc putative PPT
atattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatatgtttttgcatgatttcaaaagcggcaaaacttttataggctaggtttctggtgcttcagattggatattaatcctcgtgttcaccccgatcagGGCCGGGAGGTGTTGGGAAACTGGCAGGCTGAGAGAAGCGTTGGTAGGAGTGAAGATTTACGGTTATGGTTGCAATACAGGCGAAGTGCAGATGCTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttca