1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaaattatctacctcttctcactaatttttttacttgtatatgacgattagaaaattactagtaaaccaatcctgcgcgacgattgcaatcatggtctcttttcagtctcagagcttagttttgactctataagttacgttatggcagTCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACTCGAGATGTGGCTGATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGA
species | Physcomitrella patens |
transcript | PP1S5_195V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAA TCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACTEST: gi|67571511|gb|BJ944335.1|BJ944335
genomic: GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAAgtaaattatc ... gttatggcagTCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACT
EST: GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAA TCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACTEST: gi|162232167|gb|FC407730.1|FC407730
genomic: GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAAgtaaattatc ... gttatggcagTCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACT
EST: GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAA TCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACT
genomic: GTCTTCTAACTTATCCGTTGCTCATGGCTTCTGATATCATACTATATCAAgtaaattatc ... gttatggcagTCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACT
ggtctcttttcagtctcagagcttagttttgactctataagttacgttatggcagTCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACTCGAGATGTGGCTGATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGA
ttttgac putative branch site (score: 3)
tataagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattatctacctcttctcactaatttttttacttgtatatgacgattagaaaattactagtaaaccaatcctgcgcgacgattgcaatcatggtctcttttcagtctcagagcttagttttgactctataagttacgttatggcagTCTGACCTTGTTCCTGTCGGAGAGGATCAGAGGCAACACCTCGAATTGACTCGAGATGTGGCTGATCGTGTCAACCATCTCTATGGTGGCCGAAAATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG