1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttctgtcctggagtcttaagatgggaatataaaaccaagctactgtatgatagcggtttagcaatctcttctaactagggttttgcatttacttgtgtagTTGGCAGAGGAATTGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTGCATCTCCACAG
species | Physcomitrella patens |
transcript | PP1S58_197V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCTCAGCTTCCCGGTTGGGAGCTTCTACATGGAAGAGGTCCATGCTAAA TTGGCAGAGGAATTGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTEST: gi|67718012|gb|BJ968271.1|BJ968271
genomic: GCCTCAGCTT-CCGGTTGGGAGCTTCTACATGGAAGAGGTCCATGCTAAAgtaagtgatt ... acttgtgtagTTGGCAGAGGAATTGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGT
EST: CGCCTCAGCTTCCGGTTGGGAGCTTCTACATGGAAGAGGTCCATGCTAAA TTGGCAGAGGAATTGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTEST: gi|67578657|gb|BJ950824.1|BJ950824
genomic: CGCCTCAGCTTCCGGTTGGGAGCTTCTACATGGAAGAGGTCCATGCTAAAgtaagtgatt ... acttgtgtagTTGGCAGAGGAATTGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGT
EST: CGCCTCAGCTTCCGGTTGGGAGCTTCTACATGGAAGAGGTCCATGCTAAA AEST: gi|67578657|gb|BJ950824.1|BJ950824
genomic: CGCCTCAGCTTCCGGTTGGGAGCTTCTACATGGAAGAGGTCCATGCTAAAgtaagtgatt ... acttgtgtag-
EST: CGCCTCAGCTTCCGGTTGGGAGCTTCTACATGGAAGAGGTCCATGCTAAA A
genomic: CGCCTCAGCTTCCGGTTGGGAGCTTCTACATGGAAGAGGTCCATGCTAAAgtaagtgatt ... acttgtgtag-
tatgatagcggtttagcaatctcttctaactagggttttgcatttacttgtgtagTTGGCAGAGGAATTGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTGCATCTCCACAG
ttctaac putative branch site (score: 20)
tttactt putative PPT
atttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgtcctggagtcttaagatgggaatataaaaccaagctactgtatgatagcggtttagcaatctcttctaactagggttttgcatttacttgtgtagTTGGCAGAGGAATTGTGGTTTACTGGTGGTGGCCAGCATCTTTTATTCGGTGCATCTCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG